On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
453.4
nTPM
HPA Brain:
597.5
nTPM
GTEx:
453.4
nTPM
FANTOM5:
381.9
Scaled Tags Per Million
Macaque:
489.7
nTPM
Mouse:
1075.3
nTPM
Rat:
0.0
nTPM
Pig:
796.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
597.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 529.2
2019
Male, age 18, unknown
679.3
2586
Male, age 75, left hemisphere
638.5
1827
Male, age 72, unknown
613.6
2666
Male, age 74, left hemisphere
589.5
2828
Female, age 72, unknown
564.8
2411
Female, age 72, unknown
515.3
2219
Male, age 76, both hemispheres
443.6
1833
Male, age 53, unknown
430.2
1870
Female, age 42, unknown
425.9
1830
Male, age 51, unknown
391.3
Dorsal raphe nucleus nTPM: 554.6
2298
Female, age 72, unknown
654.9
1828
Male, age 53, unknown
619.0
2047
Male, age 72, unknown
583.0
2750
Male, age 76, both hemispheres
472.8
2016
Female, age 72, unknown
443.1
Inferior colliculus nTPM: 497.4
2097
Female, age 72, unknown
533.7
1890
Male, age 53, unknown
509.7
1848
Female, age 42, unknown
501.7
2849
Male, age 72, unknown
444.7
Median raphe nucleus nTPM: 507.9
2220
Male, age 76, midline
507.9
Periaquaductal grey, anterior nTPM: 530.2
1795
Male, age 51, unknown
589.2
1947
Male, age 18, unknown
520.9
2502
Female, age 75, unknown
480.5
Periaquaductal grey, dorsal nTPM: 451.5
2850
Male, age 76, both hemispheres
505.8
2464
Female, age 72, unknown
443.6
1840
Male, age 53, unknown
432.8
1831
Male, age 72, unknown
423.8
Periaquaductal grey, lateral nTPM: 473.2
2272
Male, age 74, both hemispheres
569.9
2140
Male, age 76, both hemispheres
443.8
2053
Male, age 18, unknown
406.0
Pretectal area nTPM: 595.4
1817
Female, age 42, unknown
841.1
1816
Male, age 51, unknown
818.8
2007
Male, age 72, unknown
802.5
1944
Female, age 72, unknown
741.4
1815
Male, age 53, unknown
626.1
2667
Female, age 75, unknown
553.9
2273
Male, age 74, both hemispheres
535.3
2224
Female, age 72, unknown
471.1
2825
Male, age 18, unknown
423.9
2316
Male, age 76, right hemisphere
370.4
2407
Male, age 75, both hemispheres
364.8
Red nucleus nTPM: 491.1
2785
Male, age 18, unknown
632.0
1821
Female, age 72, unknown
579.4
2725
Female, age 75, unknown
567.9
2588
Male, age 74, left hemisphere
540.3
2503
Female, age 72, unknown
482.1
1954
Female, age 42, unknown
472.2
2823
Male, age 76, right hemisphere
462.4
1865
Male, age 51, unknown
458.6
2769
Male, age 72, unknown
455.1
2227
Male, age 72, unknown
448.3
1904
Male, age 53, unknown
413.2
2584
Male, age 75, left hemisphere
381.3
Substantia nigra nTPM: 597.5
1916
Female, age 42, unknown
848.1
1941
Male, age 53, unknown
733.3
1889
Female, age 72, unknown
687.7
1851
Male, age 51, unknown
638.7
2241
Male, age 72, unknown
568.3
2665
Male, age 74, both hemispheres
539.7
2590
Female, age 75, unknown
512.3
2699
Male, age 18, unknown
484.9
2583
Male, age 75, right hemisphere
481.2
2409
Female, age 72, unknown
480.9
Superior colliculus nTPM: 485.9
2087
Female, age 72, unknown
641.7
1796
Male, age 53, unknown
553.6
2261
Male, age 18, unknown
538.2
2668
Female, age 75, unknown
532.4
2587
Male, age 74, left hemisphere
485.5
1895
Male, age 76, right hemisphere
450.2
1839
Male, age 51, unknown
438.8
2664
Male, age 75, both hemispheres
430.5
1913
Female, age 42, unknown
402.8
1995
Male, age 72, unknown
385.4
Ventral tegmental area nTPM: 502.1
1915
Female, age 42, unknown
601.2
2410
Female, age 72, unknown
579.3
2218
Male, age 76, both hemispheres
560.4
1942
Male, age 51, unknown
438.1
2223
Female, age 72, unknown
434.2
2021
Male, age 53, unknown
399.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
453.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 453.4
Samples: 183
Max nTPM: 1247.4
Min nTPM: 148.3
Std nTPM: 171.9
Median nTPM: 428.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1247.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1220.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1024.2
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
786.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
772.6
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
766.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
755.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
744.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
728.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
721.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
712.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
708.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
693.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
682.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
682.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
682.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
673.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
654.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
648.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
644.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
642.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
641.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
641.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
639.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
637.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
637.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
636.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
630.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
619.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
617.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
609.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
604.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
599.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
594.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
589.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
589.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
584.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
581.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
579.6
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
578.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
573.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
568.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
557.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
555.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
551.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
545.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
544.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
544.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
539.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
534.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
534.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
533.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
533.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
532.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
524.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
524.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
522.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
521.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
517.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
513.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
509.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
506.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
502.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
502.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
502.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
498.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
497.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
494.0
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
491.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
490.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
488.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
486.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
485.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
483.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
482.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
479.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
474.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
474.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
474.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
469.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
467.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
456.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
456.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
455.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
451.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
441.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
438.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
435.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
434.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
433.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
429.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
428.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
420.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
420.7
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
420.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
419.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
418.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
416.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
415.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
412.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
410.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
409.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
408.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
408.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
407.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
406.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
400.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
399.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
395.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
395.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
389.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
388.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
388.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
384.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
382.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
382.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
381.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
379.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
378.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
372.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
370.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
370.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
365.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
365.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
363.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
362.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
358.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
358.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
356.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
351.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
345.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
341.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
336.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
335.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
332.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
332.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
332.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
331.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
330.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
329.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
324.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
322.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
320.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
319.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
312.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
296.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
295.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
292.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
291.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
289.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
284.6
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
283.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
279.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
272.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
271.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
271.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
270.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
269.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
267.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
265.8
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
265.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
264.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
263.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
258.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
257.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
254.5
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
253.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
247.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
243.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
240.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
239.0
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
237.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
234.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
229.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
227.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
224.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
221.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
216.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
210.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
207.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
189.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
155.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
148.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
489.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 343.4
Samples: 1
Max nTPM: 343.4
Min nTPM: 343.4
Sample A
343.4
Midbrain nTPM: 341.0
Samples: 1
Max nTPM: 341.0
Min nTPM: 341.0
Sample A
341.0
Superior colliculi nTPM: 489.7
Samples: 1
Max nTPM: 489.7
Min nTPM: 489.7
Sample A
489.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
796.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 610.6
Samples: 3
Max nTPM: 752.8
Min nTPM: 404.1
Sample A
Female
752.8
Sample B
Female
404.1
Sample C
Male
674.8
Midbrain nTPM: 719.5
Samples: 3
Max nTPM: 903.1
Min nTPM: 476.4
Sample B
Female
476.4
Sample C
Male
903.1
Sample D
Male
778.9
Periaqueductal gray nTPM: 460.7
Samples: 3
Max nTPM: 541.8
Min nTPM: 388.7
Sample B
Female
451.5
Sample C
Male
541.8
Sample D
Male
388.7
Superior colliculi nTPM: 796.5
Samples: 4
Max nTPM: 995.4
Min nTPM: 502.1
Sample A
Female
884.6
Sample B
Female
502.1
Sample C
Male
995.4
Sample D
Male
804.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1075.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1075.3
Samples: 4
Max nTPM: 1180.4
Min nTPM: 1023.0
Sample A
1028.8
Sample B
1180.4
Sample C
1069.0
Sample D
1023.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
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The Human Protein Atlas project is funded
