MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:453.4 nTPM
HPA Brain:595.5 nTPM
GTEx:453.4 nTPM
FANTOM5:381.9 Scaled Tags Per Million
Pig:792.4 nTPM
Mouse:1176.9 nTPM
Allen mouse:11.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 595.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 527.5
2019 Male, age 18, unknown 677.2
2586 Male, age 75, left hemisphere 637.3
1827 Male, age 72, unknown 611.5
2666 Male, age 74, left hemisphere 587.3
2828 Female, age 72, unknown 562.9
2411 Female, age 72, unknown 513.6
2219 Male, age 76, both hemispheres 442.2
1833 Male, age 53, unknown 428.7
1870 Female, age 42, unknown 424.5
1830 Male, age 51, unknown 390.0
Dorsal raphe nucleus
nTPM: 552.6
2298 Female, age 72, unknown 652.4
1828 Male, age 53, unknown 616.8
2047 Male, age 72, unknown 581.2
2750 Male, age 76, both hemispheres 471.4
2016 Female, age 72, unknown 441.3
Inferior colliculus
nTPM: 495.7
2097 Female, age 72, unknown 531.7
1890 Male, age 53, unknown 508.0
1848 Female, age 42, unknown 499.9
2849 Male, age 72, unknown 443.1
Median raphe nucleus
nTPM: 506.5
2220 Male, age 76, midline 506.5
Periaquaductal grey, anterior
nTPM: 528.4
1795 Male, age 51, unknown 587.1
1947 Male, age 18, unknown 519.2
2502 Female, age 75, unknown 478.9
Periaquaductal grey, dorsal
nTPM: 450.0
2850 Male, age 76, both hemispheres 504.1
2464 Female, age 72, unknown 442.1
1840 Male, age 53, unknown 431.4
1831 Male, age 72, unknown 422.3
Periaquaductal grey, lateral
nTPM: 471.5
2272 Male, age 74, both hemispheres 567.6
2140 Male, age 76, both hemispheres 442.3
2053 Male, age 18, unknown 404.6
Pretectal area
nTPM: 593.5
1817 Female, age 42, unknown 838.2
1816 Male, age 51, unknown 816.6
2007 Male, age 72, unknown 799.6
1944 Female, age 72, unknown 739.0
1815 Male, age 53, unknown 624.4
2667 Female, age 75, unknown 552.2
2273 Male, age 74, both hemispheres 533.2
2224 Female, age 72, unknown 469.3
2825 Male, age 18, unknown 422.5
2316 Male, age 76, right hemisphere 369.2
2407 Male, age 75, both hemispheres 364.0
Red nucleus
nTPM: 489.4
2785 Male, age 18, unknown 629.7
1821 Female, age 72, unknown 577.4
2725 Female, age 75, unknown 565.8
2588 Male, age 74, left hemisphere 538.6
2503 Female, age 72, unknown 480.7
1954 Female, age 42, unknown 470.5
2823 Male, age 76, right hemisphere 460.9
1865 Male, age 51, unknown 457.0
2769 Male, age 72, unknown 453.5
2227 Male, age 72, unknown 446.9
1904 Male, age 53, unknown 411.5
2584 Male, age 75, left hemisphere 380.5
Substantia nigra
nTPM: 595.5
1916 Female, age 42, unknown 844.6
1941 Male, age 53, unknown 731.1
1889 Female, age 72, unknown 685.1
1851 Male, age 51, unknown 636.6
2241 Male, age 72, unknown 566.7
2665 Male, age 74, both hemispheres 537.6
2590 Female, age 75, unknown 510.8
2699 Male, age 18, unknown 483.1
2583 Male, age 75, right hemisphere 480.5
2409 Female, age 72, unknown 479.5
Superior colliculus
nTPM: 484.3
2087 Female, age 72, unknown 639.5
1796 Male, age 53, unknown 551.8
2261 Male, age 18, unknown 536.4
2668 Female, age 75, unknown 530.6
2587 Male, age 74, left hemisphere 483.7
1895 Male, age 76, right hemisphere 448.9
1839 Male, age 51, unknown 437.3
2664 Male, age 75, both hemispheres 429.4
1913 Female, age 42, unknown 401.2
1995 Male, age 72, unknown 384.1
Ventral tegmental area
nTPM: 500.4
1915 Female, age 42, unknown 599.1
2410 Female, age 72, unknown 577.0
2218 Male, age 76, both hemispheres 558.9
1942 Male, age 51, unknown 436.6
2223 Female, age 72, unknown 432.7
2021 Male, age 53, unknown 398.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 453.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 453.4
Samples: 183

Max nTPM: 1247.4
Min nTPM: 148.3
Std nTPM: 171.9
Median nTPM: 428.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1247.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1220.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1024.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 786.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 772.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 766.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 755.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 744.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 728.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 721.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 712.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 381.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 381.9
FF:10158-103A5 76 years, female 381.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 792.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 547.7
Samples: 4

Max nTPM: 747.9
Min nTPM: 368.7
Sample A Female 747.9
Sample B Female 402.6
Sample C Male 671.7
Sample D Male 368.7
Midbrain
nTPM: 650.5
Samples: 4

Max nTPM: 900.4
Min nTPM: 449.7
Sample A Female 449.7
Sample B Female 474.6
Sample C Male 900.4
Sample D Male 777.3
Periaqueductal gray
nTPM: 459.7
Samples: 3

Max nTPM: 540.9
Min nTPM: 387.9
Sample B Female 450.2
Sample C Male 540.9
Sample D Male 387.9
Superior colliculi
nTPM: 792.4
Samples: 4

Max nTPM: 990.6
Min nTPM: 499.9
Sample A Female 878.7
Sample B Female 499.9
Sample C Male 990.6
Sample D Male 800.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1176.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1176.9
Samples: 4

Max nTPM: 1198.9
Min nTPM: 1161.2
Sample A Male 1161.2
Sample B Male 1183.7
Sample C Female 1163.8
Sample D Female 1198.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.7
68269268 Antisense, RP_041208_02_A02, Mouse strain C57BL/6J (56 days, male) 11.7

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