On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
235.8
nTPM
HPA Brain:
529.6
nTPM
GTEx:
235.8
nTPM
FANTOM5:
560.3
Scaled Tags Per Million
Macaque:
543.3
nTPM
Mouse:
887.2
nTPM
Rat:
0.0
nTPM
Pig:
513.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
1051940
Sample
Intensity
Spinal cord_01
1721304
Spinal cord_02
2023013
Spinal cord_03
1059207
Spinal cord_04
1057167
Spinal cord_05
712757
Spinal cord_06
867900
Spinal cord_07
1046713
Spinal cord_08
779896
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
529.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 493.1
2819
Male, age 47, both hemispheres
654.1
2193
Male, age 75, both hemispheres
494.6
2734
Male, age 80, both hemispheres
419.5
2818
Female, age 79, both hemispheres
404.0
Cervical spinal cord, central gray nTPM: 529.6
2565
Male, age 75, midline
626.1
1981
Female, age 72, midline
588.2
2194
Female, age 79, both hemispheres
553.7
2816
Male, age 47, midline
464.4
2048
Male, age 55, midline
415.6
Cervical spinal cord, dorsal horn nTPM: 466.3
2173
Female, age 72, unknown
613.0
2721
Male, age 90, both hemispheres
538.4
2297
Male, age 75, both hemispheres
470.7
2069
Male, age 47, both hemispheres
435.5
2296
Male, age 66, both hemispheres
372.1
1877
Male, age 55, unknown
367.9
Cervical spinal cord, ventral horn nTPM: 528.0
2809
Male, age 90, both hemispheres
642.5
2098
Female, age 72, unknown
521.5
2480
Male, age 75, both hemispheres
520.9
2068
Male, age 55, unknown
509.4
2820
Female, age 79, both hemispheres
502.7
2295
Male, age 66, both hemispheres
471.0
Dorsal funiculus (white matter) nTPM: 401.9
2128
Male, age 75, both hemispheres
493.6
2812
Male, age 66, both hemispheres
429.8
2064
Female, age 79, both hemispheres
390.4
2817
Male, age 47, both hemispheres
349.5
2810
Male, age 90, both hemispheres
346.0
Lateral funiculus (white matter) nTPM: 408.4
2294
Male, age 66, both hemispheres
512.7
2094
Female, age 79, both hemispheres
415.9
2192
Male, age 75, both hemispheres
382.5
2099
Male, age 90, both hemispheres
322.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
235.8
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 235.8
Samples: 204
Max nTPM: 616.0
Min nTPM: 135.0
Std nTPM: 64.9
Median nTPM: 221.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
616.0
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
413.7
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
411.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
409.3
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
408.9
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
400.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
397.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
380.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
376.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
375.5
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
368.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
363.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
361.0
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
346.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
346.0
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
341.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
334.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
328.9
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
325.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
320.1
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
318.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
310.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
309.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
307.6
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
304.5
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
304.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
303.2
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
302.2
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
302.0
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
298.0
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
295.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
294.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
290.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
287.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
287.6
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
284.8
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
282.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
276.3
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
273.3
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
269.6
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
267.7
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
267.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
267.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
267.5
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
266.9
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
266.6
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
264.7
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
263.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
261.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
261.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
260.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
260.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
260.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
258.8
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
257.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
257.3
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
257.1
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
257.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
256.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
254.5
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
253.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
253.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
252.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
251.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
251.2
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
251.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
250.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
250.2
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
248.1
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
247.7
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
246.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
246.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
245.4
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
245.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
244.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
243.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
241.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
241.7
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
240.4
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
240.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
239.8
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
239.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
239.4
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
238.7
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
238.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
237.3
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
237.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
235.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
235.1
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
234.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
233.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
230.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
230.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
229.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
228.9
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
227.4
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
226.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
226.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
226.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
225.2
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
222.5
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
221.3
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
220.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
220.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
219.7
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
219.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
219.3
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
218.2
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
217.8
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
217.7
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
217.5
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
216.9
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
216.7
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
216.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
214.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
214.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
213.7
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
212.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
210.9
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
210.8
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
210.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
210.4
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
210.0
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
209.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
209.5
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
209.5
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
209.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
209.0
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
208.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
208.6
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
208.4
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
208.3
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
206.4
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
206.1
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
204.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
204.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
202.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
200.1
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
199.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
199.4
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
198.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
197.1
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
196.6
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
196.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
193.5
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
193.0
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
192.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
192.7
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
192.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
192.2
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
191.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
191.4
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
190.3
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
190.2
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
189.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
189.2
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
188.9
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
188.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
187.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
187.5
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
187.0
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
186.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
186.6
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
186.3
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
184.9
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
184.6
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
184.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
183.5
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
182.0
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
181.9
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
180.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
178.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
178.3
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
177.4
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
176.4
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
176.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
175.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
174.1
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
174.0
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
173.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
173.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
172.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
172.9
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
170.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
170.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
169.6
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
167.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
166.8
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
163.8
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
160.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
159.5
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
158.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
158.4
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
155.6
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
155.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
154.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
154.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
153.0
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
150.4
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
148.6
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
148.5
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
143.8
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
141.8
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
135.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
543.3
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 411.2
Samples: 2
Max nTPM: 546.1
Min nTPM: 276.2
Sample A
276.2
Sample B
546.1
Ventral spinal cord nTPM: 543.3
Samples: 1
Max nTPM: 543.3
Min nTPM: 543.3
Sample A
543.3
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
513.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 461.9
Samples: 4
Max nTPM: 555.2
Min nTPM: 365.7
Sample A
Female
555.2
Sample B
Female
365.7
Sample C
Male
381.7
Sample D
Male
545.0
Ventral spinal cord nTPM: 513.8
Samples: 4
Max nTPM: 575.2
Min nTPM: 424.4
Sample A
Female
524.9
Sample B
Female
530.5
Sample C
Male
575.2
Sample D
Male
424.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
887.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 887.2
Samples: 4
Max nTPM: 992.9
Min nTPM: 827.8
Sample A
827.8
Sample B
992.9
Sample C
843.4
Sample D
884.8
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.0
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 0.0
Samples: 4
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
Sample A
0.0
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The Human Protein Atlas project is funded
