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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:230.3 nTPM
HPA Brain:212.8 nTPM
GTEx:230.3 nTPM
FANTOM5:309.1 Scaled Tags Per Million
Pig:188.1 nTPM
Mouse:157.0 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

212.8
Sample id Sample description nTPM
Amygdala
nTPM: 212.8
2695 Female, age 67, right hemisphere 235.4
2814 Male, age 76, right hemisphere 235.1
2514 Male, age 75, right hemisphere 229.4
1987 Female, age 91, left hemisphere 195.1
2517 Female, age 94, left hemisphere 169.1
Basal amygdala
nTPM: 164.0
2609 Male, age 75, right hemisphere 206.3
1955 Male, age 76, both hemispheres 185.8
2110 Male, age 80, left hemisphere 165.8
2827 Female, age 67, right hemisphere 146.8
2243 Female, age 91, right hemisphere 145.9
2685 Female, age 94, left hemisphere 133.6
Central amygdala
nTPM: 182.6
1905 Male, age 76, both hemispheres 210.9
2515 Male, age 75, right hemisphere 207.6
2826 Female, age 94, left hemisphere 185.8
2239 Male, age 80, left hemisphere 156.6
2701 Female, age 91, right hemisphere 152.1
Corticomedial amygdala
nTPM: 168.2
2428 Male, age 75, right hemisphere 231.5
2240 Male, age 76, both hemispheres 186.2
2429 Female, age 94, left hemisphere 168.5
2829 Male, age 80, left hemisphere 159.1
2242 Female, age 91, right hemisphere 151.2
2535 Female, age 67, right hemisphere 112.5
Lateral amygdala
nTPM: 174.8
2516 Male, age 75, right hemisphere 209.9
2830 Female, age 67, right hemisphere 197.8
1883 Male, age 76, both hemispheres 196.9
2534 Female, age 94, left hemisphere 163.5
2256 Male, age 80, left hemisphere 157.9
2255 Female, age 91, right hemisphere 122.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 230.3
Samples: 181

Max nTPM: 353.6
Min nTPM: 143.0
Std nTPM: 42.9
Median nTPM: 221.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 353.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 339.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 326.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 319.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 317.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 309.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 309.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 309.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 308.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 308.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 305.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 303.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 302.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 302.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 294.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 294.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 293.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 293.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 292.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 291.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 289.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 287.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 286.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 283.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 281.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 281.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 280.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 279.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 276.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 275.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 275.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 274.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 272.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 270.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 269.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 269.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 268.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 268.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 267.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 267.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 266.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 265.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 265.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 263.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 263.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 262.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 261.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 261.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 260.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 260.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 259.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 258.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 257.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 257.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 256.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 253.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 251.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 249.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 246.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 246.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 244.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 243.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 243.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 242.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 242.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 241.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 241.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 240.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 238.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 238.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 237.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 236.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 235.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 234.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 234.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 233.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 232.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 231.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 230.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 230.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 230.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 229.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 228.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 228.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 228.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 227.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 226.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 224.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 223.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 222.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 221.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 221.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 220.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 220.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 219.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 219.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 218.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 218.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 218.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 217.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 217.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 216.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 215.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 215.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 215.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 214.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 213.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 213.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 212.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 212.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 212.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 211.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 210.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 210.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 210.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 209.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 208.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 208.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 208.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 207.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 207.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 206.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 206.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 206.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 205.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 205.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 205.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 204.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 204.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 203.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 202.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 200.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 199.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 199.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 198.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 197.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 196.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 195.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 195.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 195.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 195.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 195.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 195.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 194.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 194.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 194.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 193.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 192.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 191.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 191.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 191.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 189.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 188.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 188.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 184.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 183.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 182.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 182.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 182.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 181.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 179.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 179.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 177.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 171.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 171.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 171.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 170.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 170.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 168.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 168.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 167.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 163.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 162.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 160.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 159.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 157.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 155.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 155.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 151.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 143.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

309.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 309.1
FF:10151-102I7 76 years, female 309.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.1
Pig sample Sample description nTPM
Amygdala
nTPM: 188.1
Samples: 4

Max nTPM: 217.6
Min nTPM: 162.9
Sample A Female 217.6
Sample B Female 208.1
Sample C Male 162.9
Sample D Male 163.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

157.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 157.0
Samples: 4

Max nTPM: 162.1
Min nTPM: 152.1
Sample A Male 152.1
Sample B Male 155.2
Sample C Female 162.1
Sample D Female 158.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.7
73606534 Antisense, RP_051130_01_B05, Mouse strain C57BL/6J (56 days, male) 1.7

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