On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
294.0
nTPM
HPA Brain:
233.9
nTPM
GTEx:
294.0
nTPM
FANTOM5:
507.1
Scaled Tags Per Million
Macaque:
190.0
nTPM
Mouse:
144.2
nTPM
Rat:
169.4
nTPM
Pig:
367.9
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
233.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 212.6
1870
Female, age 42, unknown
256.9
2411
Female, age 72, unknown
229.5
1833
Male, age 53, unknown
229.2
1830
Male, age 51, unknown
225.3
2666
Male, age 74, left hemisphere
219.9
2828
Female, age 72, unknown
218.4
2019
Male, age 18, unknown
215.3
1827
Male, age 72, unknown
210.0
2219
Male, age 76, both hemispheres
164.4
2586
Male, age 75, left hemisphere
157.0
Dorsal raphe nucleus nTPM: 223.0
2016
Female, age 72, unknown
243.4
2750
Male, age 76, both hemispheres
230.8
2298
Female, age 72, unknown
225.4
1828
Male, age 53, unknown
214.1
2047
Male, age 72, unknown
201.2
Inferior colliculus nTPM: 188.3
2097
Female, age 72, unknown
196.4
1848
Female, age 42, unknown
192.4
1890
Male, age 53, unknown
188.8
2849
Male, age 72, unknown
175.4
Median raphe nucleus nTPM: 220.5
2220
Male, age 76, midline
220.5
Periaquaductal grey, anterior nTPM: 202.6
1947
Male, age 18, unknown
213.9
2502
Female, age 75, unknown
203.2
1795
Male, age 51, unknown
190.6
Periaquaductal grey, dorsal nTPM: 212.8
2850
Male, age 76, both hemispheres
251.3
1831
Male, age 72, unknown
215.0
2464
Female, age 72, unknown
196.3
1840
Male, age 53, unknown
188.8
Periaquaductal grey, lateral nTPM: 204.6
2140
Male, age 76, both hemispheres
209.2
2053
Male, age 18, unknown
209.0
2272
Male, age 74, both hemispheres
195.6
Pretectal area nTPM: 204.6
1815
Male, age 53, unknown
228.4
2224
Female, age 72, unknown
223.4
2667
Female, age 75, unknown
220.6
1817
Female, age 42, unknown
218.8
2316
Male, age 76, right hemisphere
214.2
2273
Male, age 74, both hemispheres
201.3
2825
Male, age 18, unknown
196.5
1944
Female, age 72, unknown
195.6
2007
Male, age 72, unknown
190.6
1816
Male, age 51, unknown
189.4
2407
Male, age 75, both hemispheres
171.4
Red nucleus nTPM: 233.9
1821
Female, age 72, unknown
285.5
1904
Male, age 53, unknown
268.3
1954
Female, age 42, unknown
261.6
1865
Male, age 51, unknown
257.1
2503
Female, age 72, unknown
244.2
2823
Male, age 76, right hemisphere
241.7
2227
Male, age 72, unknown
232.8
2769
Male, age 72, unknown
229.9
2725
Female, age 75, unknown
228.8
2785
Male, age 18, unknown
216.2
2588
Male, age 74, left hemisphere
184.7
2584
Male, age 75, left hemisphere
156.6
Substantia nigra nTPM: 225.6
2699
Male, age 18, unknown
248.2
1851
Male, age 51, unknown
242.3
2241
Male, age 72, unknown
233.4
1916
Female, age 42, unknown
233.1
2665
Male, age 74, both hemispheres
229.5
1889
Female, age 72, unknown
227.7
2409
Female, age 72, unknown
224.2
2590
Female, age 75, unknown
218.4
1941
Male, age 53, unknown
207.0
2583
Male, age 75, right hemisphere
191.8
Superior colliculus nTPM: 205.7
1913
Female, age 42, unknown
272.8
1995
Male, age 72, unknown
244.9
2587
Male, age 74, left hemisphere
231.8
1839
Male, age 51, unknown
201.1
2668
Female, age 75, unknown
194.9
1796
Male, age 53, unknown
187.5
2087
Female, age 72, unknown
187.1
2261
Male, age 18, unknown
185.2
1895
Male, age 76, right hemisphere
183.5
2664
Male, age 75, both hemispheres
168.2
Ventral tegmental area nTPM: 230.1
2223
Female, age 72, unknown
254.5
2410
Female, age 72, unknown
241.5
1915
Female, age 42, unknown
228.9
2218
Male, age 76, both hemispheres
226.5
2021
Male, age 53, unknown
222.1
1942
Male, age 51, unknown
207.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
294.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 294.0
Samples: 183
Max nTPM: 538.0
Min nTPM: 147.1
Std nTPM: 65.9
Median nTPM: 292.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
538.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
458.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
455.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
446.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
441.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
434.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
431.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
427.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
418.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
407.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
406.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
400.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
392.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
392.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
390.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
388.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
383.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
381.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
378.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
376.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
375.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
374.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
372.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
371.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
370.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
370.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
365.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
361.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
355.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
353.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
351.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
351.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
351.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
348.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
348.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
348.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
347.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
346.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
345.5
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
344.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
344.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
343.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
343.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
340.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
339.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
338.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
334.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
329.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
329.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
328.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
327.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
325.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
324.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
320.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
317.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
317.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
317.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
317.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
315.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
314.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
314.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
312.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
311.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
310.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
310.4
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
309.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
307.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
306.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
306.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
306.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
305.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
304.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
303.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
303.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
302.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
302.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
300.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
300.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
299.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
299.2
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
299.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
298.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
297.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
296.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
296.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
295.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
294.2
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
294.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
294.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
294.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
293.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
292.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
292.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
292.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
292.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
292.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
290.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
288.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
288.6
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
288.0
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
287.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
287.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
283.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
279.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
278.6
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
277.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
277.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
277.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
277.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
276.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
275.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
272.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
271.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
269.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
267.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
266.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
265.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
264.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
263.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
262.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
262.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
261.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
261.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
261.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
260.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
259.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
258.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
256.2
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
255.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
254.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
253.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
252.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
250.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
249.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
246.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
246.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
245.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
245.9
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
245.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
245.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
245.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
244.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
243.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
243.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
243.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
242.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
239.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
239.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
237.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
237.1
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
234.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
231.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
231.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
229.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
227.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
225.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
223.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
220.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
220.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
218.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
217.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
216.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
216.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
214.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
213.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
212.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
211.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
206.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
206.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
206.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
203.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
203.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
203.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
199.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
198.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
197.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
188.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
182.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
174.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
173.2
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
158.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
148.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
147.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
190.0
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 190.0
Samples: 1
Max nTPM: 190.0
Min nTPM: 190.0
Sample A
190.0
Midbrain nTPM: 145.5
Samples: 1
Max nTPM: 145.5
Min nTPM: 145.5
Sample A
145.5
Superior colliculi nTPM: 137.4
Samples: 1
Max nTPM: 137.4
Min nTPM: 137.4
Sample A
137.4
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
367.9
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 367.9
Samples: 3
Max nTPM: 420.7
Min nTPM: 338.4
Sample A
Female
420.7
Sample B
Female
338.4
Sample C
Male
344.5
Midbrain nTPM: 282.8
Samples: 3
Max nTPM: 353.1
Min nTPM: 234.5
Sample B
Female
353.1
Sample C
Male
260.9
Sample D
Male
234.5
Periaqueductal gray nTPM: 298.5
Samples: 3
Max nTPM: 304.6
Min nTPM: 288.6
Sample B
Female
302.2
Sample C
Male
304.6
Sample D
Male
288.6
Superior colliculi nTPM: 355.7
Samples: 4
Max nTPM: 392.8
Min nTPM: 317.9
Sample A
Female
392.8
Sample B
Female
386.6
Sample C
Male
317.9
Sample D
Male
325.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 144.2
Samples: 4
Max nTPM: 149.0
Min nTPM: 140.1
Sample A
145.3
Sample B
140.1
Sample C
142.3
Sample D
149.0
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.4
Rat sample
Sample description
nTPM
Midbrain nTPM: 169.4
Samples: 4
Max nTPM: 173.7
Min nTPM: 166.7
Sample A
166.7
Sample A
173.7
Sample A
170.5
Sample A
166.7
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The Human Protein Atlas project is funded
