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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:373.1 nTPM
HPA Brain:263.5 nTPM
GTEx:373.1 nTPM
FANTOM5:506.7 Scaled Tags Per Million
Pig:529.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 234.7
1981 Female, age 72, midline 295.2
2048 Male, age 55, midline 269.2
2816 Male, age 47, midline 216.0
2565 Male, age 75, midline 196.8
2194 Female, age 79, both hemispheres 196.4
Cervical spinal cord, dorsal horn
nTPM: 249.2
2173 Female, age 72, unknown 334.4
2296 Male, age 66, both hemispheres 320.9
2069 Male, age 47, both hemispheres 255.1
1877 Male, age 55, unknown 224.0
2721 Male, age 90, both hemispheres 195.3
2297 Male, age 75, both hemispheres 165.4
Cervical spinal cord, ventral horn
nTPM: 263.5
2098 Female, age 72, unknown 381.5
2809 Male, age 90, both hemispheres 286.7
2480 Male, age 75, both hemispheres 269.6
2295 Male, age 66, both hemispheres 267.0
2068 Male, age 55, unknown 194.0
2820 Female, age 79, both hemispheres 182.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 373.1
Samples: 204

Max nTPM: 568.3
Min nTPM: 183.6
Std nTPM: 65.8
Median nTPM: 374.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 568.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 544.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 539.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 522.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 507.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 497.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 492.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 489.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 489.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 485.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 485.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 479.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 477.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 477.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 473.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 473.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 470.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 468.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 464.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 459.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 459.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 457.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 457.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 456.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 456.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 453.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 453.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 446.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 441.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 436.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 434.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 433.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 431.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 429.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 428.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 426.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 423.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 421.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 419.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 419.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 419.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 418.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 418.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 417.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 416.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 413.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 412.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 412.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 412.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 411.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 410.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 409.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 408.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 408.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 407.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 407.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 407.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 407.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 406.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 405.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 404.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 404.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 404.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 404.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 403.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 403.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 402.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 400.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 399.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 398.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 395.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 395.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 393.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 393.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 392.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 392.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 392.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 392.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 392.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 391.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 391.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 389.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 387.2
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 385.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 385.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 385.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 384.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 383.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 383.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 382.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 382.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 381.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 379.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 378.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 378.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 378.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 377.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 375.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 375.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 375.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 374.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 374.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 374.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 374.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 373.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 373.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 373.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 372.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 371.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 370.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 370.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 370.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 368.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 368.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 365.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 365.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 364.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 364.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 364.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 363.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 363.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 363.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 361.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 361.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 359.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 356.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 356.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 356.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 352.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 351.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 351.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 351.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 349.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 346.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 345.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 345.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 342.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 341.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 341.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 341.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 340.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 339.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 339.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 339.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 339.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 339.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 338.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 338.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 336.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 335.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 335.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 334.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 332.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 330.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 330.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 329.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 328.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 328.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 326.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 325.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 325.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 324.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 322.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 322.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 322.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 322.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 321.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 319.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 318.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 317.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 317.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 315.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 315.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 315.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 314.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 309.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 308.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 303.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 297.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 295.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 294.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 293.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 289.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 287.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 283.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 283.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 280.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 279.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 275.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 268.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 265.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 261.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 259.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 259.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 258.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 256.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 255.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 243.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 242.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 240.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 238.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 216.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 192.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 183.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

506.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 506.7
FF:10159-103A6 76 years, female 581.4
FF:10181-103D1 60 years, female 431.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

529.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 489.5
Samples: 4

Max nTPM: 605.3
Min nTPM: 388.9
Sample A Female 388.9
Sample B Female 499.9
Sample C Male 605.3
Sample D Male 463.7
Ventral spinal cord
nTPM: 529.6
Samples: 4

Max nTPM: 614.3
Min nTPM: 472.3
Sample A Female 472.3
Sample B Female 507.7
Sample C Male 524.0
Sample D Male 614.3

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