On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
373.1
nTPM
HPA Brain:
321.4
nTPM
GTEx:
373.1
nTPM
FANTOM5:
506.7
Scaled Tags Per Million
Macaque:
244.9
nTPM
Mouse:
103.7
nTPM
Rat:
227.8
nTPM
Pig:
532.0
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
37274
Sample
Intensity
Spinal cord_01
49307
Spinal cord_02
33524
Spinal cord_03
70171
Spinal cord_04
37981
Spinal cord_05
52266
Spinal cord_06
33994
Spinal cord_07
36567
Spinal cord_08
27262
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
321.4
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 301.4
2818
Female, age 79, both hemispheres
331.9
2193
Male, age 75, both hemispheres
319.7
2819
Male, age 47, both hemispheres
288.7
2734
Male, age 80, both hemispheres
265.3
Cervical spinal cord, central gray nTPM: 235.6
1981
Female, age 72, midline
296.3
2048
Male, age 55, midline
270.3
2816
Male, age 47, midline
216.7
2565
Male, age 75, midline
197.4
2194
Female, age 79, both hemispheres
197.1
Cervical spinal cord, dorsal horn nTPM: 250.0
2173
Female, age 72, unknown
335.6
2296
Male, age 66, both hemispheres
321.8
2069
Male, age 47, both hemispheres
256.0
1877
Male, age 55, unknown
224.9
2721
Male, age 90, both hemispheres
195.9
2297
Male, age 75, both hemispheres
165.9
Cervical spinal cord, ventral horn nTPM: 264.5
2098
Female, age 72, unknown
383.1
2809
Male, age 90, both hemispheres
287.8
2480
Male, age 75, both hemispheres
270.5
2295
Male, age 66, both hemispheres
267.9
2068
Male, age 55, unknown
194.7
2820
Female, age 79, both hemispheres
182.9
Dorsal funiculus (white matter) nTPM: 317.5
2064
Female, age 79, both hemispheres
354.1
2817
Male, age 47, both hemispheres
332.7
2810
Male, age 90, both hemispheres
329.6
2128
Male, age 75, both hemispheres
318.4
2812
Male, age 66, both hemispheres
252.7
Lateral funiculus (white matter) nTPM: 321.4
2094
Female, age 79, both hemispheres
359.9
2099
Male, age 90, both hemispheres
337.7
2192
Male, age 75, both hemispheres
300.0
2294
Male, age 66, both hemispheres
288.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
373.1
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 373.1
Samples: 204
Max nTPM: 568.3
Min nTPM: 183.6
Std nTPM: 65.8
Median nTPM: 374.7
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
568.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
544.5
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
539.1
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
522.6
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
507.0
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
497.5
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
492.7
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
489.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
489.4
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
485.8
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
485.2
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
479.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
477.5
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
477.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
473.9
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
473.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
470.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
468.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
464.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
459.7
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
459.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
457.9
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
457.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
456.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
456.7
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
453.9
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
453.0
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
446.0
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
441.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
436.9
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
434.4
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
433.2
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
431.0
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
429.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
428.8
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
426.2
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
423.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
421.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
419.7
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
419.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
419.3
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
418.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
418.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
417.9
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
416.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
413.5
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
412.7
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
412.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
412.2
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
411.1
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
410.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
409.6
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
408.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
408.8
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
407.8
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
407.7
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
407.5
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
407.2
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
406.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
405.0
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
404.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
404.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
404.5
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
404.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
403.9
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
403.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
402.8
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
400.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
399.7
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
398.6
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
395.8
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
395.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
393.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
393.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
392.8
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
392.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
392.3
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
392.1
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
392.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
391.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
391.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
389.9
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
387.2
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
385.6
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
385.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
385.0
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
384.8
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
383.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
383.0
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
382.5
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
382.3
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
381.9
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
379.4
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
378.6
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
378.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
378.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
377.7
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
375.8
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
375.6
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
375.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
374.9
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
374.7
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
374.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
374.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
373.8
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
373.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
373.0
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
372.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
371.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
370.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
370.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
370.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
368.3
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
368.0
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
365.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
365.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
364.9
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
364.6
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
364.0
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
363.3
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
363.2
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
363.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
361.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
361.3
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
359.6
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
356.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
356.8
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
356.1
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
352.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
351.8
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
351.8
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
351.6
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
349.6
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
346.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
345.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
345.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
342.3
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
341.3
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
341.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
341.0
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
340.3
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
339.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
339.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
339.6
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
339.4
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
339.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
338.7
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
338.3
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
336.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
335.5
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
335.3
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
334.7
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
332.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
330.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
330.4
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
329.9
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
328.0
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
328.0
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
326.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
325.2
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
325.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
324.6
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
322.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
322.8
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
322.7
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
322.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
321.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
319.5
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
318.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
317.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
317.4
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
315.6
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
315.3
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
315.0
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
314.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
309.7
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
308.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
303.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
297.0
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
295.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
294.2
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
293.4
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
289.2
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
287.6
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
283.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
283.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
280.2
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
279.8
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
275.0
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
268.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
265.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
261.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
259.0
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
259.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
258.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
256.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
255.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
243.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
242.2
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
240.0
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
238.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
216.0
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
192.7
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
183.6
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
244.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 228.1
Samples: 2
Max nTPM: 255.2
Min nTPM: 201.1
Sample A
255.2
Sample B
201.1
Ventral spinal cord nTPM: 244.9
Samples: 1
Max nTPM: 244.9
Min nTPM: 244.9
Sample A
244.9
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
532.0
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 491.7
Samples: 4
Max nTPM: 608.2
Min nTPM: 390.3
Sample A
Female
390.3
Sample B
Female
502.4
Sample C
Male
608.2
Sample D
Male
465.7
Ventral spinal cord nTPM: 532.0
Samples: 4
Max nTPM: 617.0
Min nTPM: 474.1
Sample A
Female
474.1
Sample B
Female
510.5
Sample C
Male
526.4
Sample D
Male
617.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.7
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 103.8
Samples: 4
Max nTPM: 110.9
Min nTPM: 98.0
Sample A
106.1
Sample B
110.9
Sample C
100.1
Sample D
98.0
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
227.8
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 227.8
Samples: 4
Max nTPM: 237.9
Min nTPM: 211.4
Sample A
235.9
Sample A
237.9
Sample A
211.4
Sample A
225.9
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The Human Protein Atlas project is funded
