On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
492.9
nTPM
HPA Brain:
180.7
nTPM
GTEx:
492.9
nTPM
FANTOM5:
342.3
Scaled Tags Per Million
Mouse:
183.2
nTPM
Rat:
306.5
nTPM
Pig:
390.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
150113
Sample
Intensity
Spinal cord_01
99509
Spinal cord_02
119826
Spinal cord_03
242683
Spinal cord_04
138306
Spinal cord_05
99720
Spinal cord_06
330464
Spinal cord_07
166128
Spinal cord_08
161919
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
180.7
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 155.9
2818
Female, age 79, both hemispheres
165.8
2193
Male, age 75, both hemispheres
159.3
2734
Male, age 80, both hemispheres
154.7
2819
Male, age 47, both hemispheres
143.7
Cervical spinal cord, central gray nTPM: 103.7
1981
Female, age 72, midline
127.3
2816
Male, age 47, midline
109.0
2194
Female, age 79, both hemispheres
104.8
2048
Male, age 55, midline
91.1
2565
Male, age 75, midline
86.1
Cervical spinal cord, dorsal horn nTPM: 116.0
2296
Male, age 66, both hemispheres
206.0
2173
Female, age 72, unknown
166.0
2069
Male, age 47, both hemispheres
105.4
1877
Male, age 55, unknown
97.0
2721
Male, age 90, both hemispheres
63.8
2297
Male, age 75, both hemispheres
57.6
Cervical spinal cord, ventral horn nTPM: 119.7
2098
Female, age 72, unknown
136.5
2820
Female, age 79, both hemispheres
124.0
2068
Male, age 55, unknown
121.0
2480
Male, age 75, both hemispheres
118.3
2809
Male, age 90, both hemispheres
113.7
2295
Male, age 66, both hemispheres
104.6
Dorsal funiculus (white matter) nTPM: 180.7
2810
Male, age 90, both hemispheres
236.5
2817
Male, age 47, both hemispheres
180.4
2128
Male, age 75, both hemispheres
173.4
2064
Female, age 79, both hemispheres
162.3
2812
Male, age 66, both hemispheres
150.9
Lateral funiculus (white matter) nTPM: 160.7
2099
Male, age 90, both hemispheres
202.4
2094
Female, age 79, both hemispheres
169.9
2192
Male, age 75, both hemispheres
163.5
2294
Male, age 66, both hemispheres
107.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
492.9
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 492.9
Samples: 204
Max nTPM: 849.2
Min nTPM: 135.7
Std nTPM: 154.8
Median nTPM: 493.0
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
849.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
843.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
829.8
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
829.8
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
801.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
795.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
783.8
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
769.0
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
761.4
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
760.2
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
758.7
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
752.7
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
748.8
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
746.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
740.7
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
739.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
731.5
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
728.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
719.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
718.6
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
714.1
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
707.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
706.4
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
684.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
676.0
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
674.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
672.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
663.5
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
660.8
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
645.8
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
645.7
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
642.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
642.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
638.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
633.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
632.0
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
621.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
620.5
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
619.2
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
618.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
614.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
613.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
612.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
608.7
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
607.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
605.6
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
603.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
601.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
598.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
596.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
593.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
588.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
583.0
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
582.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
581.7
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
581.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
581.1
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
581.1
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
576.4
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
572.8
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
571.3
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
570.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
567.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
567.1
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
566.7
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
566.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
563.9
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
563.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
562.3
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
561.0
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
560.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
556.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
556.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
556.3
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
552.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
549.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
548.6
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
547.5
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
546.9
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
543.6
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
540.4
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
539.6
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
535.9
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
532.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
528.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
527.0
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
523.6
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
521.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
521.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
519.9
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
519.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
517.7
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
510.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
509.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
508.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
508.4
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
506.4
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
505.8
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
498.0
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
497.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
495.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
493.3
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
492.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
490.4
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
489.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
487.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
480.4
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
479.5
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
479.4
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
479.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
477.2
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
477.1
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
474.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
470.9
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
470.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
469.3
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
468.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
468.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
468.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
467.3
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
466.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
464.5
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
461.0
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
456.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
452.3
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
450.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
446.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
446.0
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
445.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
444.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
443.5
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
442.8
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
442.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
441.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
436.8
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
435.4
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
430.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
426.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
421.6
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
421.6
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
421.1
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
418.7
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
416.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
415.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
415.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
413.0
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
412.8
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
412.8
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
411.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
411.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
404.7
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
398.1
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
395.1
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
385.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
385.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
376.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
375.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
370.3
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
365.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
361.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
361.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
361.3
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
359.7
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
355.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
354.7
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
349.4
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
348.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
341.2
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
337.5
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
333.0
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
330.5
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
325.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
322.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
320.3
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
319.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
314.3
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
308.1
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
305.0
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
296.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
287.2
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
284.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
284.4
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
283.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
282.6
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
275.0
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
272.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
266.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
261.2
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
247.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
245.4
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
234.5
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
227.2
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
226.5
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
220.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
216.9
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
216.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
215.0
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
200.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
200.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
188.1
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
187.7
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
186.9
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
185.3
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
135.7
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
390.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 325.7
Samples: 4
Max nTPM: 357.5
Min nTPM: 307.2
Sample A
Female
319.6
Sample B
Female
307.2
Sample C
Male
357.5
Sample D
Male
318.6
Ventral spinal cord nTPM: 390.4
Samples: 4
Max nTPM: 420.3
Min nTPM: 368.6
Sample A
Female
390.5
Sample B
Female
368.6
Sample C
Male
382.2
Sample D
Male
420.3
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
183.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 183.2
Samples: 4
Max nTPM: 202.0
Min nTPM: 173.7
Sample A
173.7
Sample B
202.0
Sample C
179.5
Sample D
177.5
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
306.5
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 306.4
Samples: 4
Max nTPM: 338.2
Min nTPM: 237.5
Sample A
323.9
Sample A
338.2
Sample A
326.1
Sample A
237.5
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The Human Protein Atlas project is funded
