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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:492.9 nTPM
HPA Brain:119.4 nTPM
GTEx:492.9 nTPM
FANTOM5:342.3 Scaled Tags Per Million
Pig:388.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 103.4
1981 Female, age 72, midline 126.8
2816 Male, age 47, midline 108.7
2194 Female, age 79, both hemispheres 104.5
2048 Male, age 55, midline 90.8
2565 Male, age 75, midline 86.0
Cervical spinal cord, dorsal horn
nTPM: 115.7
2296 Male, age 66, both hemispheres 205.6
2173 Female, age 72, unknown 165.4
2069 Male, age 47, both hemispheres 105.1
1877 Male, age 55, unknown 96.7
2721 Male, age 90, both hemispheres 63.6
2297 Male, age 75, both hemispheres 57.6
Cervical spinal cord, ventral horn
nTPM: 119.4
2098 Female, age 72, unknown 136.0
2820 Female, age 79, both hemispheres 123.7
2068 Male, age 55, unknown 120.7
2480 Male, age 75, both hemispheres 118.1
2809 Male, age 90, both hemispheres 113.3
2295 Male, age 66, both hemispheres 104.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

492.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 492.9
Samples: 204

Max nTPM: 849.2
Min nTPM: 135.7
Std nTPM: 154.8
Median nTPM: 493.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 849.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 843.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 829.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 829.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 801.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 795.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 783.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 769.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 761.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 760.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 758.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 752.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 748.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 746.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 740.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 739.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 731.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 728.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 719.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 718.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 714.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 707.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 706.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 684.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 676.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 674.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 672.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 663.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 660.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 645.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 645.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 642.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 642.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 638.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 633.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 632.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 621.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 620.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 619.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 618.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 614.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 613.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 612.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 608.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 607.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 605.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 603.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 601.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 598.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 596.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 593.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 588.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 583.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 582.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 581.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 581.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 581.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 581.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 576.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 572.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 571.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 570.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 567.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 567.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 566.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 566.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 563.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 563.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 562.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 561.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 560.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 556.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 556.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 556.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 552.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 549.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 548.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 547.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 546.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 543.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 540.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 539.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 535.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 532.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 528.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 527.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 523.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 521.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 521.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 519.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 519.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 517.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 510.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 509.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 508.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 508.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 506.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 505.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 498.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 497.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 495.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 493.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 492.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 490.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 489.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 487.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 480.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 479.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 479.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 479.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 477.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 477.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 474.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 470.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 470.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 469.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 468.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 468.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 468.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 467.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 466.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 464.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 461.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 456.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 452.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 450.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 446.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 446.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 445.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 444.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 443.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 442.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 442.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 441.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 436.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 435.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 430.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 426.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 421.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 421.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 421.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 418.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 416.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 415.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 415.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 413.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 412.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 412.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 411.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 411.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 404.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 398.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 395.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 385.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 385.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 376.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 375.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 370.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 365.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 361.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 361.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 361.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 359.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 355.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 354.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 349.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 348.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 341.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 337.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 333.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 330.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 325.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 322.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 320.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 319.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 314.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 308.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 305.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 296.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 287.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 284.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 284.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 283.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 282.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 275.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 272.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 266.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 261.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 247.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 245.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 234.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 227.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 226.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 220.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 216.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 216.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 215.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 200.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 200.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 188.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 187.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 186.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 185.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 135.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

342.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 342.3
FF:10181-103D1 60 years, female 376.0
FF:10159-103A6 76 years, female 308.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 324.3
Samples: 4

Max nTPM: 355.7
Min nTPM: 305.7
Sample A Female 318.5
Sample B Female 305.7
Sample C Male 355.7
Sample D Male 317.2
Ventral spinal cord
nTPM: 388.6
Samples: 4

Max nTPM: 418.5
Min nTPM: 366.6
Sample A Female 389.0
Sample B Female 366.6
Sample C Male 380.4
Sample D Male 418.5

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