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  • RAB7A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:159.8 nTPM
HPA Brain:162.1 nTPM
GTEx:159.8 nTPM
FANTOM5:351.8 Scaled Tags Per Million
Pig:210.0 nTPM
Mouse:303.3 nTPM
Allen mouse:21.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.1
Sample id Sample description nTPM
Amygdala
nTPM: 162.1
2814 Male, age 76, right hemisphere 203.0
1987 Female, age 91, left hemisphere 175.0
2514 Male, age 75, right hemisphere 170.5
2695 Female, age 67, right hemisphere 139.0
2517 Female, age 94, left hemisphere 122.9
Basal amygdala
nTPM: 141.6
1955 Male, age 76, both hemispheres 189.3
2243 Female, age 91, right hemisphere 153.4
2110 Male, age 80, left hemisphere 152.5
2609 Male, age 75, right hemisphere 151.3
2685 Female, age 94, left hemisphere 103.1
2827 Female, age 67, right hemisphere 99.7
Central amygdala
nTPM: 136.7
1905 Male, age 76, both hemispheres 161.3
2239 Male, age 80, left hemisphere 145.1
2515 Male, age 75, right hemisphere 145.1
2701 Female, age 91, right hemisphere 137.7
2826 Female, age 94, left hemisphere 94.4
Corticomedial amygdala
nTPM: 151.7
2240 Male, age 76, both hemispheres 180.3
2829 Male, age 80, left hemisphere 164.8
2242 Female, age 91, right hemisphere 156.6
2429 Female, age 94, left hemisphere 147.8
2428 Male, age 75, right hemisphere 145.8
2535 Female, age 67, right hemisphere 114.9
Lateral amygdala
nTPM: 137.3
1883 Male, age 76, both hemispheres 191.8
2256 Male, age 80, left hemisphere 164.4
2516 Male, age 75, right hemisphere 143.9
2255 Female, age 91, right hemisphere 131.4
2534 Female, age 94, left hemisphere 99.8
2830 Female, age 67, right hemisphere 92.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

159.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 159.8
Samples: 181

Max nTPM: 236.8
Min nTPM: 65.5
Std nTPM: 24.3
Median nTPM: 158.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 236.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 234.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 227.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 220.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 216.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 211.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 206.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 203.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 199.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 198.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 198.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 197.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 197.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 197.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 196.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 192.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 192.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 188.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 187.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 186.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 185.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 185.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 185.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 184.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 184.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 184.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 182.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 182.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 181.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 180.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 179.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 179.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 179.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 178.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 178.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 178.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 177.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 176.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 176.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 176.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 175.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 174.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 173.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 173.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 172.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 172.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 172.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 171.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 171.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 171.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 170.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 170.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 169.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 168.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 168.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 168.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 168.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 168.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 167.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 167.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 166.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 166.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 165.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 165.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 165.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 164.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 164.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 164.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 164.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 163.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 163.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 162.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 162.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 162.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 162.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 161.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 161.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 161.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 161.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 161.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 161.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 161.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 160.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 160.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 160.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 160.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 160.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 159.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 158.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 158.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 158.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 158.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 157.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 157.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 157.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 157.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 156.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 156.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 155.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 155.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 155.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 155.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 155.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 154.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 154.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 154.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 154.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 154.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 154.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 154.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 153.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 153.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 153.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 152.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 152.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 152.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 152.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 151.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 151.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 151.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 151.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 150.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 150.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 150.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 149.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 149.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 148.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 148.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 148.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 148.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 147.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 147.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 146.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 146.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 145.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 145.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 144.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 144.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 143.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 142.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 142.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 141.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 141.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 140.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 140.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 139.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 139.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 139.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 138.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 138.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 137.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 137.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 137.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 134.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 134.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 134.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 133.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 132.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 129.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 128.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 128.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 127.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 127.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 127.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 126.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 124.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 123.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 121.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 120.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 114.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 114.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 112.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 111.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 94.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 65.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

351.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 351.8
FF:10151-102I7 76 years, female 351.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.0
Pig sample Sample description nTPM
Amygdala
nTPM: 210.1
Samples: 4

Max nTPM: 279.5
Min nTPM: 180.9
Sample A Female 279.5
Sample B Female 189.9
Sample C Male 189.9
Sample D Male 180.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

303.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 303.4
Samples: 4

Max nTPM: 316.4
Min nTPM: 292.6
Sample A Male 304.6
Sample B Male 292.6
Sample C Female 316.4
Sample D Female 299.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.7
532633 Antisense, RP_040810_02_G08, Mouse strain C57BL/6J (56 days, male) 21.7

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