On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
181.0
nTPM
HPA Brain:
209.8
nTPM
GTEx:
181.0
nTPM
FANTOM5:
401.7
Scaled Tags Per Million
Macaque:
202.1
nTPM
Mouse:
258.4
nTPM
Rat:
248.1
nTPM
Pig:
405.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
52237
Sample
Intensity
Spinal cord_01
60022
Spinal cord_02
40419
Spinal cord_03
83482
Spinal cord_04
47577
Spinal cord_05
56896
Spinal cord_06
69610
Spinal cord_07
45630
Spinal cord_08
33165
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
209.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 189.0
2193
Male, age 75, both hemispheres
224.0
2819
Male, age 47, both hemispheres
194.0
2818
Female, age 79, both hemispheres
176.8
2734
Male, age 80, both hemispheres
161.1
Cervical spinal cord, central gray nTPM: 165.7
2048
Male, age 55, midline
193.6
1981
Female, age 72, midline
189.0
2816
Male, age 47, midline
150.9
2194
Female, age 79, both hemispheres
147.7
2565
Male, age 75, midline
147.5
Cervical spinal cord, dorsal horn nTPM: 196.0
2296
Male, age 66, both hemispheres
237.6
2721
Male, age 90, both hemispheres
209.5
2173
Female, age 72, unknown
194.0
2069
Male, age 47, both hemispheres
184.8
2297
Male, age 75, both hemispheres
184.6
1877
Male, age 55, unknown
165.4
Cervical spinal cord, ventral horn nTPM: 157.5
2098
Female, age 72, unknown
215.3
2295
Male, age 66, both hemispheres
165.2
2480
Male, age 75, both hemispheres
151.4
2820
Female, age 79, both hemispheres
140.3
2068
Male, age 55, unknown
139.0
2809
Male, age 90, both hemispheres
134.0
Dorsal funiculus (white matter) nTPM: 196.7
2128
Male, age 75, both hemispheres
229.8
2817
Male, age 47, both hemispheres
216.1
2810
Male, age 90, both hemispheres
198.4
2064
Female, age 79, both hemispheres
188.7
2812
Male, age 66, both hemispheres
150.5
Lateral funiculus (white matter) nTPM: 209.8
2099
Male, age 90, both hemispheres
221.6
2192
Male, age 75, both hemispheres
209.4
2294
Male, age 66, both hemispheres
209.0
2094
Female, age 79, both hemispheres
199.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
181.0
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 181.0
Samples: 204
Max nTPM: 282.7
Min nTPM: 94.1
Std nTPM: 24.8
Median nTPM: 180.0
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
282.7
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
247.3
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
246.7
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
244.3
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
234.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
224.3
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
223.8
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
223.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
222.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
222.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
219.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
217.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
217.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
216.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
216.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
216.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
213.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
213.3
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
213.0
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
212.5
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
211.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
211.5
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
211.3
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
211.2
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
210.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
209.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
209.7
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
208.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
208.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
208.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
206.7
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
206.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
206.4
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
206.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
205.7
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
205.2
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
204.6
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
204.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
203.1
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
202.9
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
202.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
201.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
201.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
200.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
200.4
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
198.8
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
198.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
198.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
197.8
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
197.2
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
197.0
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
196.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
195.7
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
195.1
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
194.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
194.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
193.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
193.0
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
192.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
191.9
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
191.6
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
191.3
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
189.7
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
188.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
188.7
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
188.6
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
188.5
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
188.4
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
188.3
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
188.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
188.1
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
187.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
186.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
186.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
186.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
186.0
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
185.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
185.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
185.6
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
185.2
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
185.1
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
184.6
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
184.5
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
184.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
184.3
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
184.2
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
184.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
184.1
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
183.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
183.8
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
183.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
183.6
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
183.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
183.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
182.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
182.6
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
181.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
181.2
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
181.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
180.9
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
180.3
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
180.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
179.9
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
179.8
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
179.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
179.3
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
179.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
179.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
178.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
178.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
178.1
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
177.8
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
177.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
177.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
176.8
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
176.3
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
176.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
175.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
174.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
173.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
173.5
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
173.4
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
173.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
172.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
172.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
172.5
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
172.3
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
171.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
171.6
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
171.2
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
171.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
171.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
171.1
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
171.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
170.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
170.7
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
170.6
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
170.2
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
170.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
169.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
169.7
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
168.9
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
168.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
168.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
167.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
166.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
166.6
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
166.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
166.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
166.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
165.3
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
165.3
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
164.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
164.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
164.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
163.8
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
163.7
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
163.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
163.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
163.1
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
162.9
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
162.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
162.3
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
162.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
161.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
161.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
160.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
160.7
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
160.4
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
160.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
159.5
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
159.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
158.8
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
158.5
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
158.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
157.9
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
157.8
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
157.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
156.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
154.7
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
153.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
153.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
152.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
150.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
150.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
149.8
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
149.0
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
147.0
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
146.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
145.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
145.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
144.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
144.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
143.6
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
143.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
142.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
141.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
139.6
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
139.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
137.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
124.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
123.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
121.9
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
94.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
202.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 195.4
Samples: 2
Max nTPM: 210.5
Min nTPM: 180.3
Sample A
180.3
Sample B
210.5
Ventral spinal cord nTPM: 202.1
Samples: 1
Max nTPM: 202.1
Min nTPM: 202.1
Sample A
202.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
405.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 367.5
Samples: 4
Max nTPM: 411.6
Min nTPM: 329.0
Sample A
Female
329.0
Sample B
Female
368.2
Sample C
Male
411.6
Sample D
Male
361.3
Ventral spinal cord nTPM: 405.4
Samples: 4
Max nTPM: 424.7
Min nTPM: 380.4
Sample A
Female
399.7
Sample B
Female
380.4
Sample C
Male
416.7
Sample D
Male
424.7
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
258.4
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 258.4
Samples: 4
Max nTPM: 267.5
Min nTPM: 250.4
Sample A
250.4
Sample B
267.5
Sample C
251.9
Sample D
263.8
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
248.1
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 248.1
Samples: 4
Max nTPM: 256.5
Min nTPM: 233.5
Sample A
256.5
Sample A
252.6
Sample A
249.8
Sample A
233.5
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The Human Protein Atlas project is funded
