MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:174.2 nTPM
HPA Brain:197.3 nTPM
GTEx:174.2 nTPM
FANTOM5:346.6 Scaled Tags Per Million
Pig:347.1 nTPM
Mouse:297.4 nTPM
Allen mouse:12.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 197.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 150.8
1833 Male, age 53, unknown 174.8
1870 Female, age 42, unknown 164.3
2019 Male, age 18, unknown 163.6
1830 Male, age 51, unknown 161.6
2828 Female, age 72, unknown 160.5
2219 Male, age 76, both hemispheres 160.4
1827 Male, age 72, unknown 155.6
2411 Female, age 72, unknown 142.8
2666 Male, age 74, left hemisphere 130.7
2586 Male, age 75, left hemisphere 93.8
Dorsal raphe nucleus
nTPM: 163.0
2750 Male, age 76, both hemispheres 185.3
1828 Male, age 53, unknown 169.2
2047 Male, age 72, unknown 167.5
2016 Female, age 72, unknown 146.7
2298 Female, age 72, unknown 146.4
Inferior colliculus
nTPM: 144.2
2097 Female, age 72, unknown 153.4
2849 Male, age 72, unknown 143.4
1890 Male, age 53, unknown 142.1
1848 Female, age 42, unknown 138.0
Median raphe nucleus
nTPM: 197.3
2220 Male, age 76, midline 197.3
Periaquaductal grey, anterior
nTPM: 152.0
1947 Male, age 18, unknown 166.6
2502 Female, age 75, unknown 153.9
1795 Male, age 51, unknown 135.6
Periaquaductal grey, dorsal
nTPM: 166.7
2850 Male, age 76, both hemispheres 217.2
2464 Female, age 72, unknown 163.2
1831 Male, age 72, unknown 148.2
1840 Male, age 53, unknown 138.3
Periaquaductal grey, lateral
nTPM: 193.6
2272 Male, age 74, both hemispheres 232.8
2140 Male, age 76, both hemispheres 182.3
2053 Male, age 18, unknown 165.8
Pretectal area
nTPM: 175.2
2273 Male, age 74, both hemispheres 206.9
1817 Female, age 42, unknown 191.1
1815 Male, age 53, unknown 188.4
2667 Female, age 75, unknown 186.8
1944 Female, age 72, unknown 173.8
2407 Male, age 75, both hemispheres 173.4
2007 Male, age 72, unknown 171.5
1816 Male, age 51, unknown 171.4
2224 Female, age 72, unknown 163.4
2316 Male, age 76, right hemisphere 156.1
2825 Male, age 18, unknown 144.0
Red nucleus
nTPM: 161.6
1821 Female, age 72, unknown 195.5
2823 Male, age 76, right hemisphere 191.6
1865 Male, age 51, unknown 181.1
2725 Female, age 75, unknown 178.4
1954 Female, age 42, unknown 176.6
1904 Male, age 53, unknown 163.1
2785 Male, age 18, unknown 159.7
2227 Male, age 72, unknown 156.7
2769 Male, age 72, unknown 151.7
2503 Female, age 72, unknown 146.8
2584 Male, age 75, left hemisphere 133.5
2588 Male, age 74, left hemisphere 104.3
Substantia nigra
nTPM: 178.9
1916 Female, age 42, unknown 234.7
1851 Male, age 51, unknown 196.6
2699 Male, age 18, unknown 191.7
2409 Female, age 72, unknown 191.5
2241 Male, age 72, unknown 189.8
1941 Male, age 53, unknown 186.1
1889 Female, age 72, unknown 180.7
2590 Female, age 75, unknown 144.9
2665 Male, age 74, both hemispheres 137.5
2583 Male, age 75, right hemisphere 135.6
Superior colliculus
nTPM: 152.1
2587 Male, age 74, left hemisphere 176.9
2087 Female, age 72, unknown 164.7
2261 Male, age 18, unknown 160.8
1995 Male, age 72, unknown 157.8
1913 Female, age 42, unknown 156.6
1895 Male, age 76, right hemisphere 154.4
2668 Female, age 75, unknown 151.1
1796 Male, age 53, unknown 146.6
1839 Male, age 51, unknown 144.8
2664 Male, age 75, both hemispheres 107.9
Ventral tegmental area
nTPM: 175.7
2218 Male, age 76, both hemispheres 199.3
2410 Female, age 72, unknown 191.2
1915 Female, age 42, unknown 189.3
2223 Female, age 72, unknown 171.9
2021 Male, age 53, unknown 151.8
1942 Male, age 51, unknown 150.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 174.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 174.2
Samples: 183

Max nTPM: 286.3
Min nTPM: 86.0
Std nTPM: 27.9
Median nTPM: 171.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 286.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 251.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 241.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 229.1
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 226.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 225.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 223.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 221.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 218.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 218.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 216.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 346.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 346.6
FF:10158-103A5 76 years, female 346.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 347.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 326.7
Samples: 4

Max nTPM: 361.7
Min nTPM: 265.3
Sample A Female 361.7
Sample B Female 265.3
Sample C Male 350.3
Sample D Male 329.3
Midbrain
nTPM: 347.1
Samples: 4

Max nTPM: 496.0
Min nTPM: 239.2
Sample A Female 496.0
Sample B Female 292.0
Sample C Male 361.2
Sample D Male 239.2
Periaqueductal gray
nTPM: 255.0
Samples: 3

Max nTPM: 271.6
Min nTPM: 236.3
Sample B Female 257.0
Sample C Male 271.6
Sample D Male 236.3
Superior colliculi
nTPM: 327.6
Samples: 4

Max nTPM: 377.6
Min nTPM: 264.0
Sample A Female 349.0
Sample B Female 264.0
Sample C Male 377.6
Sample D Male 319.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 297.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 297.4
Samples: 4

Max nTPM: 300.9
Min nTPM: 293.6
Sample A Male 298.7
Sample B Male 293.6
Sample C Female 296.4
Sample D Female 300.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
532633 Antisense, RP_040810_02_G08, Mouse strain C57BL/6J (56 days, male) 12.9

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