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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:137.4 nTPM
HPA Brain:103.5 nTPM
GTEx:137.4 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:85.1 nTPM
Mouse:250.0 nTPM
Allen mouse:15.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.5
Sample id Sample description nTPM
Amygdala
nTPM: 103.5
2814 Male, age 76, right hemisphere 124.2
2514 Male, age 75, right hemisphere 107.2
1987 Female, age 91, left hemisphere 104.0
2695 Female, age 67, right hemisphere 96.7
2517 Female, age 94, left hemisphere 85.6
Basal amygdala
nTPM: 93.4
2609 Male, age 75, right hemisphere 101.1
2243 Female, age 91, right hemisphere 100.0
2110 Male, age 80, left hemisphere 99.4
1955 Male, age 76, both hemispheres 96.3
2685 Female, age 94, left hemisphere 95.7
2827 Female, age 67, right hemisphere 67.9
Central amygdala
nTPM: 91.9
1905 Male, age 76, both hemispheres 112.0
2239 Male, age 80, left hemisphere 92.5
2515 Male, age 75, right hemisphere 88.6
2701 Female, age 91, right hemisphere 85.1
2826 Female, age 94, left hemisphere 81.3
Corticomedial amygdala
nTPM: 95.1
2829 Male, age 80, left hemisphere 109.5
2428 Male, age 75, right hemisphere 101.2
2242 Female, age 91, right hemisphere 100.6
2429 Female, age 94, left hemisphere 93.6
2240 Male, age 76, both hemispheres 90.7
2535 Female, age 67, right hemisphere 75.1
Lateral amygdala
nTPM: 84.9
1883 Male, age 76, both hemispheres 109.2
2516 Male, age 75, right hemisphere 88.7
2534 Female, age 94, left hemisphere 86.5
2256 Male, age 80, left hemisphere 77.7
2255 Female, age 91, right hemisphere 77.6
2830 Female, age 67, right hemisphere 69.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 137.4
Samples: 181

Max nTPM: 212.0
Min nTPM: 90.0
Std nTPM: 19.6
Median nTPM: 135.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 212.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 199.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 197.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 187.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 179.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 179.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 178.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 175.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 168.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 168.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 168.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 166.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 166.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 166.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 166.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 166.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 164.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 162.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 160.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 160.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 159.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 159.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 159.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 157.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 157.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 157.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 156.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 156.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 155.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 153.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 153.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 153.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 152.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 152.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 152.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 152.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 152.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 151.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 150.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 150.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 149.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 149.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 148.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 148.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 146.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 146.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 145.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 144.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 144.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 143.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 142.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 142.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 141.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 141.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 141.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 141.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 141.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 141.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 141.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 140.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 140.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 140.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 140.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 140.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 140.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 140.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 139.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 139.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 139.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 139.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 139.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 138.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 138.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 137.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 137.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 137.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 137.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 137.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 137.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 137.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 137.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 136.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 136.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 136.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 135.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 135.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 135.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 135.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 135.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 135.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 135.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 135.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 134.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 134.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 133.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 133.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 133.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 132.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 132.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 132.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 132.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 132.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 132.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 132.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 132.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 132.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 131.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 131.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 131.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 131.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 131.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 131.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 130.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 129.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 129.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 129.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 129.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 129.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 129.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 128.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 128.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 128.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 128.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 127.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 127.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 127.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 127.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 127.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 126.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 126.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 126.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 126.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 125.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 125.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 125.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 125.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 124.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 124.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 122.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 122.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 121.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 121.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 120.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 119.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 119.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 118.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 118.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 115.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 115.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 115.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 114.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 114.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 114.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 113.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 113.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 112.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 110.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 110.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 109.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 109.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 108.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 107.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 107.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 106.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 106.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 104.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 100.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 98.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 98.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 97.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 95.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 90.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 105.4
FF:10151-102I7 76 years, female 105.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.1
Pig sample Sample description nTPM
Amygdala
nTPM: 85.1
Samples: 4

Max nTPM: 116.4
Min nTPM: 73.9
Sample A Female 116.4
Sample B Female 74.8
Sample C Male 73.9
Sample D Male 75.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 250.0
Samples: 4

Max nTPM: 260.1
Min nTPM: 243.1
Sample A Male 249.5
Sample B Male 247.2
Sample C Female 243.1
Sample D Female 260.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.4
75080633 Antisense, RP_060412_04_G04, Mouse strain C57BL/6J (56 days, male) 17.0
70919131 Antisense, RP_050712_04_C05, Mouse strain C57BL/6J (56 days, male) 14.9
74357646 Antisense, RP_060119_03_B08, Mouse strain C57BL/6J (56 days, male) 14.4

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