MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:127.2 nTPM
HPA Brain:110.7 nTPM
GTEx:127.2 nTPM
FANTOM5:95.0 Scaled Tags Per Million
Pig:142.3 nTPM
Mouse:213.7 nTPM
Allen mouse:10.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 110.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.6
1827 Male, age 72, unknown 101.1
2019 Male, age 18, unknown 98.9
2666 Male, age 74, left hemisphere 94.9
1833 Male, age 53, unknown 91.3
2411 Female, age 72, unknown 91.2
1870 Female, age 42, unknown 91.0
2828 Female, age 72, unknown 90.6
1830 Male, age 51, unknown 85.0
2219 Male, age 76, both hemispheres 81.4
2586 Male, age 75, left hemisphere 80.7
Dorsal raphe nucleus
nTPM: 97.1
2298 Female, age 72, unknown 105.5
2750 Male, age 76, both hemispheres 99.6
1828 Male, age 53, unknown 99.1
2047 Male, age 72, unknown 98.1
2016 Female, age 72, unknown 83.2
Inferior colliculus
nTPM: 83.8
2097 Female, age 72, unknown 86.3
1890 Male, age 53, unknown 84.3
1848 Female, age 42, unknown 82.9
2849 Male, age 72, unknown 81.6
Median raphe nucleus
nTPM: 106.8
2220 Male, age 76, midline 106.8
Periaquaductal grey, anterior
nTPM: 93.6
1947 Male, age 18, unknown 99.4
1795 Male, age 51, unknown 96.2
2502 Female, age 75, unknown 85.2
Periaquaductal grey, dorsal
nTPM: 87.0
2850 Male, age 76, both hemispheres 92.3
1831 Male, age 72, unknown 89.2
1840 Male, age 53, unknown 88.3
2464 Female, age 72, unknown 78.1
Periaquaductal grey, lateral
nTPM: 88.9
2272 Male, age 74, both hemispheres 102.8
2140 Male, age 76, both hemispheres 84.3
2053 Male, age 18, unknown 79.5
Pretectal area
nTPM: 102.9
1817 Female, age 42, unknown 124.4
1816 Male, age 51, unknown 117.4
1944 Female, age 72, unknown 116.4
2007 Male, age 72, unknown 114.4
1815 Male, age 53, unknown 108.9
2667 Female, age 75, unknown 101.7
2273 Male, age 74, both hemispheres 101.4
2407 Male, age 75, both hemispheres 93.2
2224 Female, age 72, unknown 89.7
2825 Male, age 18, unknown 83.0
2316 Male, age 76, right hemisphere 81.4
Red nucleus
nTPM: 87.9
1821 Female, age 72, unknown 102.1
2725 Female, age 75, unknown 97.6
2785 Male, age 18, unknown 95.6
1865 Male, age 51, unknown 88.0
2823 Male, age 76, right hemisphere 87.1
2503 Female, age 72, unknown 86.0
1954 Female, age 42, unknown 84.7
2227 Male, age 72, unknown 84.0
2769 Male, age 72, unknown 83.9
2584 Male, age 75, left hemisphere 82.9
2588 Male, age 74, left hemisphere 82.9
1904 Male, age 53, unknown 80.2
Substantia nigra
nTPM: 110.7
1916 Female, age 42, unknown 133.8
2665 Male, age 74, both hemispheres 120.8
1941 Male, age 53, unknown 117.7
1851 Male, age 51, unknown 116.5
1889 Female, age 72, unknown 111.9
2699 Male, age 18, unknown 107.2
2590 Female, age 75, unknown 104.8
2241 Male, age 72, unknown 102.4
2583 Male, age 75, right hemisphere 101.7
2409 Female, age 72, unknown 90.0
Superior colliculus
nTPM: 93.6
2087 Female, age 72, unknown 103.4
2261 Male, age 18, unknown 103.0
2587 Male, age 74, left hemisphere 101.3
2668 Female, age 75, unknown 96.7
1796 Male, age 53, unknown 93.9
1913 Female, age 42, unknown 92.3
2664 Male, age 75, both hemispheres 89.3
1995 Male, age 72, unknown 85.8
1839 Male, age 51, unknown 85.0
1895 Male, age 76, right hemisphere 84.8
Ventral tegmental area
nTPM: 101.9
1915 Female, age 42, unknown 113.6
2410 Female, age 72, unknown 108.8
2218 Male, age 76, both hemispheres 107.2
2223 Female, age 72, unknown 96.5
1942 Male, age 51, unknown 94.0
2021 Male, age 53, unknown 91.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 127.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 127.2
Samples: 183

Max nTPM: 178.2
Min nTPM: 88.5
Std nTPM: 18.2
Median nTPM: 125.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 178.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 175.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 169.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 169.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 163.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 162.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 161.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 161.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 159.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 159.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 158.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.0
FF:10158-103A5 76 years, female 95.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 142.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 129.2
Samples: 4

Max nTPM: 137.1
Min nTPM: 113.4
Sample A Female 134.6
Sample B Female 131.6
Sample C Male 137.1
Sample D Male 113.4
Midbrain
nTPM: 123.5
Samples: 4

Max nTPM: 156.0
Min nTPM: 103.0
Sample A Female 156.0
Sample B Female 106.8
Sample C Male 128.2
Sample D Male 103.0
Periaqueductal gray
nTPM: 112.0
Samples: 3

Max nTPM: 133.1
Min nTPM: 100.1
Sample B Female 100.1
Sample C Male 133.1
Sample D Male 102.7
Superior colliculi
nTPM: 142.3
Samples: 4

Max nTPM: 155.5
Min nTPM: 118.5
Sample A Female 155.5
Sample B Female 154.6
Sample C Male 140.5
Sample D Male 118.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 213.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 213.7
Samples: 4

Max nTPM: 217.3
Min nTPM: 210.8
Sample A Male 213.1
Sample B Male 213.5
Sample C Female 210.8
Sample D Female 217.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
75080633 Antisense, RP_060412_04_G04, Mouse strain C57BL/6J (56 days, male) 13.8
74357646 Antisense, RP_060119_03_B08, Mouse strain C57BL/6J (56 days, male) 9.5
70919131 Antisense, RP_050712_04_C05, Mouse strain C57BL/6J (56 days, male) 8.8

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