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  • HSP90AA1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:525.3 nTPM
HPA Brain:664.4 nTPM
GTEx:525.3 nTPM
FANTOM5:1246.4 Scaled Tags Per Million
Pig:671.0 nTPM
Mouse:816.1 nTPM
Allen mouse:20.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

664.4
Sample id Sample description nTPM
Amygdala
nTPM: 664.4
2814 Male, age 76, right hemisphere 790.6
2514 Male, age 75, right hemisphere 701.2
1987 Female, age 91, left hemisphere 656.9
2695 Female, age 67, right hemisphere 589.8
2517 Female, age 94, left hemisphere 583.4
Basal amygdala
nTPM: 508.5
2609 Male, age 75, right hemisphere 614.3
2110 Male, age 80, left hemisphere 586.9
1955 Male, age 76, both hemispheres 515.9
2243 Female, age 91, right hemisphere 466.6
2827 Female, age 67, right hemisphere 439.3
2685 Female, age 94, left hemisphere 428.0
Central amygdala
nTPM: 582.0
1905 Male, age 76, both hemispheres 659.7
2515 Male, age 75, right hemisphere 648.8
2826 Female, age 94, left hemisphere 597.6
2239 Male, age 80, left hemisphere 533.9
2701 Female, age 91, right hemisphere 470.0
Corticomedial amygdala
nTPM: 491.6
2428 Male, age 75, right hemisphere 610.9
2829 Male, age 80, left hemisphere 578.0
2240 Male, age 76, both hemispheres 535.3
2429 Female, age 94, left hemisphere 452.5
2242 Female, age 91, right hemisphere 423.6
2535 Female, age 67, right hemisphere 349.4
Lateral amygdala
nTPM: 540.4
1883 Male, age 76, both hemispheres 709.7
2516 Male, age 75, right hemisphere 645.1
2534 Female, age 94, left hemisphere 551.8
2830 Female, age 67, right hemisphere 527.8
2256 Male, age 80, left hemisphere 455.4
2255 Female, age 91, right hemisphere 352.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

525.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 525.3
Samples: 181

Max nTPM: 2670.1
Min nTPM: 247.6
Std nTPM: 297.0
Median nTPM: 440.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2670.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2061.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1634.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1569.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1527.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1298.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1171.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1168.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1137.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1128.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 937.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 898.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 895.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 891.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 830.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 801.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 792.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 744.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 713.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 712.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 707.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 697.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 674.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 670.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 664.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 658.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 650.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 641.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 627.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 625.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 617.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 612.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 610.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 595.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 586.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 583.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 581.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 580.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 574.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 569.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 566.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 562.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 554.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 549.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 548.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 548.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 537.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 537.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 535.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 534.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 532.3
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 532.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 528.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 528.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 520.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 515.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 513.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 509.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 506.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 506.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 503.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 500.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 498.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 497.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 493.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 491.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 487.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 486.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 486.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 486.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 482.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 482.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 480.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 478.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 476.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 476.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 475.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 474.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 469.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 469.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 468.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 466.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 465.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 459.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 459.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 458.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 457.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 447.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 447.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 441.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 440.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 437.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 434.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 432.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 431.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 430.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 429.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 427.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 426.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 426.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 426.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 423.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 422.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 418.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 415.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 414.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 412.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 412.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 410.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 409.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 409.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 408.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 406.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 405.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 405.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 405.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 404.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 404.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 401.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 400.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 400.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 399.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 397.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 396.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 395.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 394.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 391.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 388.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 387.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 386.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 386.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 385.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 383.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 383.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 381.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 380.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 380.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 378.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 378.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 374.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 373.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 372.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 368.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 366.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 366.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 366.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 365.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 363.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 361.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 359.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 356.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 356.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 356.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 355.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 353.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 351.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 351.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 350.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 346.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 346.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 344.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 339.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 336.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 332.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 331.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 331.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 331.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 331.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 328.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 325.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 318.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 317.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 310.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 304.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 297.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 292.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 290.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 289.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 289.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 264.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 247.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1246.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1246.4
FF:10151-102I7 76 years, female 1246.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

671.0
Pig sample Sample description nTPM
Amygdala
nTPM: 671.0
Samples: 4

Max nTPM: 841.4
Min nTPM: 594.1
Sample A Female 841.4
Sample B Female 654.3
Sample C Male 594.3
Sample D Male 594.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

816.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 816.2
Samples: 4

Max nTPM: 895.7
Min nTPM: 777.6
Sample A Male 895.7
Sample B Male 778.0
Sample C Female 777.6
Sample D Female 813.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.5
69012681 Antisense, RP_050309_01_C05, Mouse strain C57BL/6J (56 days, male) 20.5

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