MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:696.8 nTPM
HPA Brain:961.2 nTPM
GTEx:696.8 nTPM
FANTOM5:2191.6 Scaled Tags Per Million
Pig:1187.0 nTPM
Mouse:1102.9 nTPM
Allen mouse:20.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 961.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 708.8
2219 Male, age 76, both hemispheres 999.7
2411 Female, age 72, unknown 887.3
1827 Male, age 72, unknown 803.7
2019 Male, age 18, unknown 757.2
2666 Male, age 74, left hemisphere 671.2
1870 Female, age 42, unknown 662.8
1833 Male, age 53, unknown 615.2
2828 Female, age 72, unknown 603.9
1830 Male, age 51, unknown 566.9
2586 Male, age 75, left hemisphere 519.6
Dorsal raphe nucleus
nTPM: 848.7
2298 Female, age 72, unknown 1120.7
2047 Male, age 72, unknown 943.0
1828 Male, age 53, unknown 779.8
2750 Male, age 76, both hemispheres 744.0
2016 Female, age 72, unknown 656.0
Inferior colliculus
nTPM: 549.7
2097 Female, age 72, unknown 678.4
1848 Female, age 42, unknown 519.8
1890 Male, age 53, unknown 518.1
2849 Male, age 72, unknown 482.6
Median raphe nucleus
nTPM: 961.2
2220 Male, age 76, midline 961.2
Periaquaductal grey, anterior
nTPM: 710.2
1947 Male, age 18, unknown 778.5
1795 Male, age 51, unknown 700.8
2502 Female, age 75, unknown 651.2
Periaquaductal grey, dorsal
nTPM: 633.6
2850 Male, age 76, both hemispheres 695.3
1840 Male, age 53, unknown 615.7
2464 Female, age 72, unknown 613.8
1831 Male, age 72, unknown 609.5
Periaquaductal grey, lateral
nTPM: 632.5
2272 Male, age 74, both hemispheres 720.7
2053 Male, age 18, unknown 594.7
2140 Male, age 76, both hemispheres 582.0
Pretectal area
nTPM: 784.7
1816 Male, age 51, unknown 1050.8
1944 Female, age 72, unknown 959.2
2007 Male, age 72, unknown 951.7
1817 Female, age 42, unknown 895.6
1815 Male, age 53, unknown 852.7
2273 Male, age 74, both hemispheres 825.0
2224 Female, age 72, unknown 779.2
2667 Female, age 75, unknown 700.2
2407 Male, age 75, both hemispheres 598.5
2825 Male, age 18, unknown 582.8
2316 Male, age 76, right hemisphere 435.6
Red nucleus
nTPM: 623.5
2725 Female, age 75, unknown 807.5
1821 Female, age 72, unknown 803.4
2785 Male, age 18, unknown 692.8
1954 Female, age 42, unknown 670.7
2503 Female, age 72, unknown 639.8
1865 Male, age 51, unknown 627.2
1904 Male, age 53, unknown 618.0
2588 Male, age 74, left hemisphere 597.2
2227 Male, age 72, unknown 526.6
2769 Male, age 72, unknown 523.7
2823 Male, age 76, right hemisphere 502.0
2584 Male, age 75, left hemisphere 473.0
Substantia nigra
nTPM: 837.2
1916 Female, age 42, unknown 1089.6
2241 Male, age 72, unknown 971.2
1941 Male, age 53, unknown 961.0
1851 Male, age 51, unknown 947.8
1889 Female, age 72, unknown 945.3
2409 Female, age 72, unknown 876.4
2699 Male, age 18, unknown 750.4
2590 Female, age 75, unknown 638.3
2583 Male, age 75, right hemisphere 615.7
2665 Male, age 74, both hemispheres 575.8
Superior colliculus
nTPM: 657.0
2087 Female, age 72, unknown 816.7
2668 Female, age 75, unknown 751.8
2261 Male, age 18, unknown 727.8
2587 Male, age 74, left hemisphere 725.5
1796 Male, age 53, unknown 700.9
1913 Female, age 42, unknown 613.6
2664 Male, age 75, both hemispheres 577.8
1895 Male, age 76, right hemisphere 572.5
1839 Male, age 51, unknown 544.2
1995 Male, age 72, unknown 538.9
Ventral tegmental area
nTPM: 759.9
2410 Female, age 72, unknown 925.6
1915 Female, age 42, unknown 845.0
2218 Male, age 76, both hemispheres 737.5
2021 Male, age 53, unknown 691.8
1942 Male, age 51, unknown 685.8
2223 Female, age 72, unknown 673.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 696.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 696.8
Samples: 183

Max nTPM: 3262.1
Min nTPM: 235.9
Std nTPM: 424.2
Median nTPM: 559.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 3262.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2573.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 2550.7
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 2190.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 2171.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1787.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 1650.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1521.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 1510.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1501.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1471.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2191.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2191.6
FF:10158-103A5 76 years, female 2191.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1187.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1106.2
Samples: 4

Max nTPM: 1318.1
Min nTPM: 846.3
Sample A Female 1318.1
Sample B Female 846.3
Sample C Male 1145.1
Sample D Male 1115.1
Midbrain
nTPM: 1187.0
Samples: 4

Max nTPM: 1747.8
Min nTPM: 891.0
Sample A Female 1747.8
Sample B Female 1041.0
Sample C Male 1068.0
Sample D Male 891.0
Periaqueductal gray
nTPM: 982.3
Samples: 3

Max nTPM: 1039.2
Min nTPM: 947.7
Sample B Female 959.9
Sample C Male 1039.2
Sample D Male 947.7
Superior colliculi
nTPM: 1047.7
Samples: 4

Max nTPM: 1164.2
Min nTPM: 802.4
Sample A Female 1120.4
Sample B Female 802.4
Sample C Male 1164.2
Sample D Male 1103.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1102.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1102.9
Samples: 4

Max nTPM: 1195.6
Min nTPM: 996.8
Sample A Male 996.8
Sample B Male 1121.8
Sample C Female 1195.6
Sample D Female 1097.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.1
69012681 Antisense, RP_050309_01_C05, Mouse strain C57BL/6J (56 days, male) 20.1

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