On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
696.8
nTPM
HPA Brain:
958.8
nTPM
GTEx:
696.8
nTPM
FANTOM5:
2191.6
Scaled Tags Per Million
Macaque:
572.6
nTPM
Mouse:
714.1
nTPM
Rat:
601.0
nTPM
Pig:
1108.9
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
958.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 710.4
2219
Male, age 76, both hemispheres
997.5
2411
Female, age 72, unknown
890.1
1827
Male, age 72, unknown
805.7
2019
Male, age 18, unknown
759.0
2666
Male, age 74, left hemisphere
673.5
1870
Female, age 42, unknown
664.6
1833
Male, age 53, unknown
616.8
2828
Female, age 72, unknown
605.8
1830
Male, age 51, unknown
568.3
2586
Male, age 75, left hemisphere
522.5
Dorsal raphe nucleus nTPM: 850.4
2298
Female, age 72, unknown
1124.7
2047
Male, age 72, unknown
945.1
1828
Male, age 53, unknown
781.8
2750
Male, age 76, both hemispheres
742.2
2016
Female, age 72, unknown
658.3
Inferior colliculus nTPM: 551.4
2097
Female, age 72, unknown
680.7
1848
Female, age 42, unknown
521.4
1890
Male, age 53, unknown
519.5
2849
Male, age 72, unknown
484.0
Median raphe nucleus nTPM: 958.8
2220
Male, age 76, midline
958.8
Periaquaductal grey, anterior nTPM: 712.1
1947
Male, age 18, unknown
780.3
1795
Male, age 51, unknown
702.9
2502
Female, age 75, unknown
653.1
Periaquaductal grey, dorsal nTPM: 634.5
2850
Male, age 76, both hemispheres
694.0
1840
Male, age 53, unknown
617.1
2464
Female, age 72, unknown
615.7
1831
Male, age 72, unknown
611.2
Periaquaductal grey, lateral nTPM: 633.5
2272
Male, age 74, both hemispheres
723.4
2053
Male, age 18, unknown
596.2
2140
Male, age 76, both hemispheres
580.9
Pretectal area nTPM: 786.8
1816
Male, age 51, unknown
1053.0
1944
Female, age 72, unknown
961.9
2007
Male, age 72, unknown
954.3
1817
Female, age 42, unknown
898.4
1815
Male, age 53, unknown
854.4
2273
Male, age 74, both hemispheres
828.1
2224
Female, age 72, unknown
782.0
2667
Female, age 75, unknown
702.0
2407
Male, age 75, both hemispheres
602.2
2825
Male, age 18, unknown
584.3
2316
Male, age 76, right hemisphere
434.6
Red nucleus nTPM: 625.2
2725
Female, age 75, unknown
809.9
1821
Female, age 72, unknown
805.7
2785
Male, age 18, unknown
694.7
1954
Female, age 42, unknown
672.9
2503
Female, age 72, unknown
641.6
1865
Male, age 51, unknown
628.9
1904
Male, age 53, unknown
620.0
2588
Male, age 74, left hemisphere
598.8
2227
Male, age 72, unknown
527.8
2769
Male, age 72, unknown
525.1
2823
Male, age 76, right hemisphere
501.0
2584
Male, age 75, left hemisphere
475.7
Substantia nigra nTPM: 839.7
1916
Female, age 42, unknown
1093.8
2241
Male, age 72, unknown
973.3
1941
Male, age 53, unknown
963.1
1851
Male, age 51, unknown
950.4
1889
Female, age 72, unknown
948.4
2409
Female, age 72, unknown
878.9
2699
Male, age 18, unknown
752.5
2590
Female, age 75, unknown
639.9
2583
Male, age 75, right hemisphere
618.9
2665
Male, age 74, both hemispheres
577.9
Superior colliculus nTPM: 658.8
2087
Female, age 72, unknown
819.1
2668
Female, age 75, unknown
754.0
2261
Male, age 18, unknown
729.6
2587
Male, age 74, left hemisphere
728.0
1796
Male, age 53, unknown
702.6
1913
Female, age 42, unknown
615.8
2664
Male, age 75, both hemispheres
581.4
1895
Male, age 76, right hemisphere
571.1
1839
Male, age 51, unknown
545.7
1995
Male, age 72, unknown
540.3
Ventral tegmental area nTPM: 761.5
2410
Female, age 72, unknown
928.9
1915
Female, age 42, unknown
847.7
2218
Male, age 76, both hemispheres
735.6
2021
Male, age 53, unknown
693.5
1942
Male, age 51, unknown
687.7
2223
Female, age 72, unknown
675.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
696.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 696.8
Samples: 183
Max nTPM: 3262.1
Min nTPM: 235.9
Std nTPM: 424.2
Median nTPM: 559.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3262.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2573.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2550.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
2190.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
2171.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1787.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1650.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1521.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1510.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1501.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1471.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1403.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1298.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1287.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1269.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1216.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1208.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1146.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1143.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1140.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1052.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1043.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1038.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1012.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1005.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
990.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
988.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
984.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
980.1
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
963.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
943.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
918.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
918.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
902.9
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
877.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
873.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
864.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
862.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
849.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
847.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
833.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
781.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
781.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
761.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
760.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
753.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
751.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
739.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
737.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
736.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
727.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
721.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
719.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
717.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
713.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
707.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
696.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
693.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
692.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
690.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
687.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
673.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
668.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
662.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
653.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
648.9
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
643.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
640.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
630.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
621.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
620.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
617.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
614.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
612.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
611.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
608.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
608.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
602.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
602.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
593.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
593.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
591.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
590.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
588.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
585.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
580.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
580.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
573.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
570.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
564.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
562.2
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
559.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
558.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
552.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
549.2
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
548.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
546.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
543.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
543.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
540.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
539.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
536.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
533.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
533.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
529.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
527.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
523.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
521.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
519.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
517.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
515.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
513.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
513.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
508.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
507.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
506.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
504.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
502.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
498.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
498.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
496.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
495.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
490.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
488.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
487.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
484.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
483.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
482.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
482.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
475.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
474.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
473.5
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
473.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
472.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
469.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
468.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
468.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
467.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
466.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
466.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
461.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
454.5
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
454.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
442.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
441.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
437.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
437.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
434.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
433.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
430.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
430.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
429.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
427.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
424.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
424.0
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
423.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
421.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
418.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
417.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
413.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
411.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
411.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
405.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
385.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
383.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
382.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
381.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
374.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
372.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
370.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
369.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
354.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
352.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
344.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
343.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
334.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
327.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
320.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
319.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
305.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
301.5
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
276.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
235.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
572.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 534.2
Samples: 1
Max nTPM: 534.2
Min nTPM: 534.2
Sample A
534.2
Midbrain nTPM: 572.6
Samples: 1
Max nTPM: 572.6
Min nTPM: 572.6
Sample A
572.6
Superior colliculi nTPM: 443.6
Samples: 1
Max nTPM: 443.6
Min nTPM: 443.6
Sample A
443.6
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1108.9
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1108.9
Samples: 3
Max nTPM: 1326.8
Min nTPM: 849.4
Sample A
Female
1326.8
Sample B
Female
849.4
Sample C
Male
1150.5
Midbrain nTPM: 1003.0
Samples: 3
Max nTPM: 1071.3
Min nTPM: 892.9
Sample B
Female
1044.9
Sample C
Male
1071.3
Sample D
Male
892.9
Periaqueductal gray nTPM: 984.4
Samples: 3
Max nTPM: 1040.9
Min nTPM: 949.6
Sample B
Female
962.7
Sample C
Male
1040.9
Sample D
Male
949.6
Superior colliculi nTPM: 1053.2
Samples: 4
Max nTPM: 1169.9
Min nTPM: 806.0
Sample A
Female
1127.9
Sample B
Female
806.0
Sample C
Male
1169.9
Sample D
Male
1109.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
714.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 714.0
Samples: 4
Max nTPM: 771.1
Min nTPM: 653.1
Sample A
653.1
Sample B
771.1
Sample C
721.1
Sample D
710.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
601.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 601.0
Samples: 4
Max nTPM: 614.8
Min nTPM: 578.2
Sample A
601.4
Sample A
609.6
Sample A
578.2
Sample A
614.8
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The Human Protein Atlas project is funded
