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  • RPS5
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:619.8 nTPM
HPA Brain:284.3 nTPM
GTEx:619.8 nTPM
FANTOM5:211.8 Scaled Tags Per Million
Pig:153.8 nTPM
Mouse:568.1 nTPM
Allen mouse:7.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.3
Sample id Sample description nTPM
Amygdala
nTPM: 261.7
2695 Female, age 67, right hemisphere 324.9
2517 Female, age 94, left hemisphere 267.2
2514 Male, age 75, right hemisphere 262.5
1987 Female, age 91, left hemisphere 233.6
2814 Male, age 76, right hemisphere 220.2
Basal amygdala
nTPM: 233.5
2827 Female, age 67, right hemisphere 339.1
2609 Male, age 75, right hemisphere 276.4
2685 Female, age 94, left hemisphere 224.0
2110 Male, age 80, left hemisphere 223.9
2243 Female, age 91, right hemisphere 171.6
1955 Male, age 76, both hemispheres 165.8
Central amygdala
nTPM: 266.5
2826 Female, age 94, left hemisphere 424.6
2515 Male, age 75, right hemisphere 313.8
1905 Male, age 76, both hemispheres 211.2
2239 Male, age 80, left hemisphere 200.6
2701 Female, age 91, right hemisphere 182.3
Corticomedial amygdala
nTPM: 210.3
2428 Male, age 75, right hemisphere 285.4
2535 Female, age 67, right hemisphere 252.9
2829 Male, age 80, left hemisphere 213.5
2429 Female, age 94, left hemisphere 192.3
2242 Female, age 91, right hemisphere 174.0
2240 Male, age 76, both hemispheres 143.8
Lateral amygdala
nTPM: 284.3
2830 Female, age 67, right hemisphere 441.9
2516 Male, age 75, right hemisphere 325.9
2534 Female, age 94, left hemisphere 311.8
2256 Male, age 80, left hemisphere 247.4
2255 Female, age 91, right hemisphere 197.2
1883 Male, age 76, both hemispheres 181.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

619.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 619.8
Samples: 181

Max nTPM: 1575.3
Min nTPM: 286.8
Std nTPM: 223.0
Median nTPM: 563.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1575.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1555.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1431.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1430.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1256.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1252.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1096.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1078.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1054.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1049.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1048.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1035.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 997.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 977.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 966.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 943.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 934.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 918.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 880.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 874.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 868.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 853.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 848.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 832.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 816.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 810.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 805.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 801.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 798.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 793.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 793.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 789.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 788.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 776.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 771.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 751.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 749.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 738.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 733.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 714.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 710.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 707.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 699.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 693.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 687.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 686.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 677.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 672.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 672.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 669.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 667.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 667.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 666.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 664.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 654.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 651.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 650.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 646.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 640.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 639.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 637.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 637.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 625.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 622.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 621.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 620.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 617.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 613.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 608.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 607.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 600.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 593.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 586.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 584.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 584.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 583.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 579.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 578.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 577.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 576.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 575.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 574.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 572.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 572.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 571.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 571.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 567.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 566.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 565.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 564.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 563.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 561.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 559.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 556.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 549.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 547.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 544.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 543.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 543.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 540.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 539.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 539.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 538.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 537.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 536.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 535.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 532.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 529.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 527.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 526.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 525.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 523.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 520.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 519.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 517.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 516.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 516.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 515.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 514.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 511.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 510.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 509.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 508.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 504.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 504.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 504.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 500.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 500.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 499.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 499.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 496.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 494.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 493.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 481.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 480.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 475.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 473.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 473.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 471.8
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 469.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 468.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 467.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 464.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 463.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 463.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 462.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 462.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 461.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 460.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 457.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 457.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 446.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 444.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 435.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 434.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 433.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 432.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 430.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 428.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 422.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 419.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 418.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 415.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 415.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 403.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 396.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 394.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 394.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 388.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 382.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 379.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 377.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 375.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 371.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 370.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 362.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 361.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 349.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 338.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 327.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 286.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

211.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 211.8
FF:10151-102I7 76 years, female 211.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

153.8
Pig sample Sample description nTPM
Amygdala
nTPM: 153.8
Samples: 4

Max nTPM: 193.2
Min nTPM: 110.1
Sample A Female 193.2
Sample B Female 151.0
Sample C Male 160.9
Sample D Male 110.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

568.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 568.1
Samples: 4

Max nTPM: 605.6
Min nTPM: 546.6
Sample A Male 546.6
Sample B Male 568.3
Sample C Female 605.6
Sample D Female 552.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.4
77464982 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 7.4
77868800 Antisense, RP_070129_02_F08, Mouse strain C57BL/6J (56 days, male) 3.0

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