On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
618.4
nTPM
HPA Brain:
285.6
nTPM
GTEx:
618.4
nTPM
FANTOM5:
284.5
Scaled Tags Per Million
Macaque:
106.2
nTPM
Mouse:
303.8
nTPM
Rat:
152.5
nTPM
Pig:
241.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
285.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 262.2
2586
Male, age 75, left hemisphere
390.9
2666
Male, age 74, left hemisphere
288.9
2411
Female, age 72, unknown
288.6
1870
Female, age 42, unknown
261.0
1827
Male, age 72, unknown
251.6
2828
Female, age 72, unknown
249.0
1833
Male, age 53, unknown
235.8
1830
Male, age 51, unknown
225.9
2019
Male, age 18, unknown
220.8
2219
Male, age 76, both hemispheres
209.4
Dorsal raphe nucleus nTPM: 266.9
2298
Female, age 72, unknown
281.1
2016
Female, age 72, unknown
273.8
2750
Male, age 76, both hemispheres
264.1
2047
Male, age 72, unknown
263.0
1828
Male, age 53, unknown
252.5
Inferior colliculus nTPM: 227.8
1890
Male, age 53, unknown
244.1
2097
Female, age 72, unknown
236.7
1848
Female, age 42, unknown
222.8
2849
Male, age 72, unknown
207.8
Median raphe nucleus nTPM: 220.3
2220
Male, age 76, midline
220.3
Periaquaductal grey, anterior nTPM: 285.6
2502
Female, age 75, unknown
338.2
1947
Male, age 18, unknown
263.4
1795
Male, age 51, unknown
255.3
Periaquaductal grey, dorsal nTPM: 228.1
1840
Male, age 53, unknown
252.1
2464
Female, age 72, unknown
240.3
1831
Male, age 72, unknown
238.7
2850
Male, age 76, both hemispheres
181.5
Periaquaductal grey, lateral nTPM: 210.6
2053
Male, age 18, unknown
261.3
2140
Male, age 76, both hemispheres
189.4
2272
Male, age 74, both hemispheres
181.0
Pretectal area nTPM: 220.8
2825
Male, age 18, unknown
240.5
2007
Male, age 72, unknown
239.8
2407
Male, age 75, both hemispheres
237.4
2316
Male, age 76, right hemisphere
236.7
2224
Female, age 72, unknown
228.6
1815
Male, age 53, unknown
228.0
1817
Female, age 42, unknown
225.4
1816
Male, age 51, unknown
221.2
2273
Male, age 74, both hemispheres
194.0
1944
Female, age 72, unknown
190.0
2667
Female, age 75, unknown
187.2
Red nucleus nTPM: 271.4
2503
Female, age 72, unknown
326.8
2584
Male, age 75, left hemisphere
309.8
1821
Female, age 72, unknown
293.9
1904
Male, age 53, unknown
286.5
2588
Male, age 74, left hemisphere
285.2
2769
Male, age 72, unknown
284.9
1865
Male, age 51, unknown
279.5
2227
Male, age 72, unknown
277.6
2785
Male, age 18, unknown
246.7
2725
Female, age 75, unknown
244.0
1954
Female, age 42, unknown
224.1
2823
Male, age 76, right hemisphere
197.9
Substantia nigra nTPM: 273.3
1851
Male, age 51, unknown
338.8
2665
Male, age 74, both hemispheres
304.1
2699
Male, age 18, unknown
296.4
2590
Female, age 75, unknown
291.1
1916
Female, age 42, unknown
284.2
2583
Male, age 75, right hemisphere
263.5
1889
Female, age 72, unknown
248.9
1941
Male, age 53, unknown
238.4
2241
Male, age 72, unknown
236.0
2409
Female, age 72, unknown
231.1
Superior colliculus nTPM: 258.4
2664
Male, age 75, both hemispheres
325.7
2587
Male, age 74, left hemisphere
299.5
1995
Male, age 72, unknown
266.9
2668
Female, age 75, unknown
259.1
1796
Male, age 53, unknown
257.9
1839
Male, age 51, unknown
257.7
1913
Female, age 42, unknown
255.0
2261
Male, age 18, unknown
233.8
1895
Male, age 76, right hemisphere
216.3
2087
Female, age 72, unknown
212.1
Ventral tegmental area nTPM: 266.3
2410
Female, age 72, unknown
302.7
1915
Female, age 42, unknown
294.4
2223
Female, age 72, unknown
270.4
2021
Male, age 53, unknown
262.1
1942
Male, age 51, unknown
255.6
2218
Male, age 76, both hemispheres
212.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
618.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 618.4
Samples: 183
Max nTPM: 1339.5
Min nTPM: 281.2
Std nTPM: 205.5
Median nTPM: 588.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1339.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1309.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1250.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1239.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1178.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1158.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1059.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1046.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1024.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1009.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1007.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
924.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
909.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
904.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
904.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
899.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
895.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
884.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
883.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
876.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
866.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
866.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
859.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
848.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
841.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
836.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
836.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
826.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
826.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
825.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
810.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
808.9
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
799.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
789.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
784.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
781.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
780.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
777.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
771.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
761.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
760.6
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
747.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
736.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
736.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
732.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
729.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
725.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
708.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
705.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
698.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
696.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
693.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
691.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
686.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
686.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
680.8
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
674.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
672.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
671.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
669.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
669.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
667.8
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
667.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
666.9
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
661.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
660.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
660.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
656.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
653.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
647.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
644.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
642.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
640.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
636.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
632.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
631.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
631.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
630.6
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
629.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
627.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
618.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
617.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
609.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
607.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
599.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
599.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
597.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
592.7
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
592.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
591.8
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
590.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
588.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
582.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
580.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
578.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
569.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
566.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
564.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
557.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
557.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
556.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
548.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
547.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
544.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
543.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
539.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
538.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
538.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
538.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
537.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
533.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
530.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
527.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
526.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
522.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
520.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
518.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
517.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
509.3
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
509.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
508.7
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
508.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
506.2
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
502.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
499.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
496.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
495.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
493.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
492.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
491.6
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
491.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
490.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
489.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
488.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
485.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
483.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
479.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
474.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
474.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
470.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
460.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
459.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
457.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
452.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
450.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
447.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
444.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
444.2
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
444.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
443.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
441.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
441.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
427.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
423.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
422.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
421.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
421.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
420.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
419.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
408.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
405.1
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
405.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
399.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
397.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
380.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
375.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
375.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
375.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
373.4
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
368.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
367.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
360.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
358.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
351.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
348.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
346.6
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
332.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
322.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
311.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
299.8
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
295.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
293.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
281.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
106.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 106.2
Samples: 1
Max nTPM: 106.2
Min nTPM: 106.2
Sample A
106.2
Midbrain nTPM: 80.8
Samples: 1
Max nTPM: 80.8
Min nTPM: 80.8
Sample A
80.8
Superior colliculi nTPM: 98.9
Samples: 1
Max nTPM: 98.9
Min nTPM: 98.9
Sample A
98.9
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
241.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 239.4
Samples: 3
Max nTPM: 292.6
Min nTPM: 181.2
Sample A
Female
292.6
Sample B
Female
244.3
Sample C
Male
181.2
Midbrain nTPM: 192.9
Samples: 3
Max nTPM: 235.1
Min nTPM: 161.4
Sample B
Female
235.1
Sample C
Male
182.3
Sample D
Male
161.4
Periaqueductal gray nTPM: 176.3
Samples: 3
Max nTPM: 183.4
Min nTPM: 166.7
Sample B
Female
183.4
Sample C
Male
178.7
Sample D
Male
166.7
Superior colliculi nTPM: 241.8
Samples: 4
Max nTPM: 285.7
Min nTPM: 190.5
Sample A
Female
285.7
Sample B
Female
275.4
Sample C
Male
190.5
Sample D
Male
215.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
303.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 303.8
Samples: 4
Max nTPM: 334.6
Min nTPM: 274.8
Sample A
334.6
Sample B
313.6
Sample C
274.8
Sample D
292.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
152.5
Rat sample
Sample description
nTPM
Midbrain nTPM: 152.5
Samples: 4
Max nTPM: 155.1
Min nTPM: 145.6
Sample A
154.1
Sample A
145.6
Sample A
155.1
Sample A
155.1
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The Human Protein Atlas project is funded
