On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
641.8
nTPM
HPA Brain:
370.2
nTPM
GTEx:
641.8
nTPM
FANTOM5:
212.0
Scaled Tags Per Million
Macaque:
154.3
nTPM
Mouse:
193.2
nTPM
Rat:
166.6
nTPM
Pig:
334.2
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
24789
Sample
Intensity
Spinal cord_01
54265
Spinal cord_02
30829
Spinal cord_03
25553
Spinal cord_04
37754
Spinal cord_05
24024
Spinal cord_06
21907
Spinal cord_07
19673
Spinal cord_08
19180
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
370.2
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 301.3
2734
Male, age 80, both hemispheres
332.0
2819
Male, age 47, both hemispheres
312.9
2818
Female, age 79, both hemispheres
285.0
2193
Male, age 75, both hemispheres
275.2
Cervical spinal cord, central gray nTPM: 292.7
2565
Male, age 75, midline
380.3
1981
Female, age 72, midline
364.4
2816
Male, age 47, midline
251.8
2048
Male, age 55, midline
234.1
2194
Female, age 79, both hemispheres
233.0
Cervical spinal cord, dorsal horn nTPM: 276.4
2173
Female, age 72, unknown
396.5
2296
Male, age 66, both hemispheres
310.7
2069
Male, age 47, both hemispheres
307.6
1877
Male, age 55, unknown
281.2
2297
Male, age 75, both hemispheres
194.9
2721
Male, age 90, both hemispheres
167.6
Cervical spinal cord, ventral horn nTPM: 370.2
2480
Male, age 75, both hemispheres
540.4
2809
Male, age 90, both hemispheres
465.3
2098
Female, age 72, unknown
400.8
2295
Male, age 66, both hemispheres
319.2
2068
Male, age 55, unknown
307.7
2820
Female, age 79, both hemispheres
187.7
Dorsal funiculus (white matter) nTPM: 287.7
2810
Male, age 90, both hemispheres
334.1
2064
Female, age 79, both hemispheres
296.1
2812
Male, age 66, both hemispheres
282.9
2817
Male, age 47, both hemispheres
269.2
2128
Male, age 75, both hemispheres
256.1
Lateral funiculus (white matter) nTPM: 309.8
2094
Female, age 79, both hemispheres
330.4
2099
Male, age 90, both hemispheres
316.1
2192
Male, age 75, both hemispheres
298.7
2294
Male, age 66, both hemispheres
294.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
641.8
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 641.8
Samples: 204
Max nTPM: 1575.9
Min nTPM: 281.4
Std nTPM: 188.6
Median nTPM: 606.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
1575.9
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1223.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1065.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1015.7
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1004.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
997.9
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
979.1
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
977.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
966.7
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
956.8
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
954.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
950.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
948.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
943.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
943.0
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
942.5
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
940.0
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
937.1
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
932.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
929.5
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
911.5
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
911.1
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
900.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
900.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
892.9
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
887.5
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
870.9
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
864.5
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
863.7
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
859.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
855.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
846.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
845.3
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
844.6
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
837.7
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
827.8
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
826.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
817.4
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
813.4
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
808.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
808.5
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
803.0
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
800.6
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
799.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
791.9
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
791.2
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
789.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
789.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
789.2
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
775.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
774.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
769.5
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
767.1
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
758.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
754.1
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
752.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
742.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
737.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
736.8
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
734.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
720.4
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
711.6
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
708.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
707.2
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
704.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
703.2
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
700.3
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
697.5
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
696.4
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
690.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
688.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
688.5
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
678.8
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
678.2
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
677.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
675.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
665.8
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
664.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
659.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
659.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
654.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
653.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
649.4
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
649.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
648.4
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
646.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
644.8
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
643.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
641.3
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
639.9
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
637.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
634.6
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
633.6
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
632.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
631.7
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
631.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
627.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
627.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
626.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
612.7
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
609.0
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
608.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
604.9
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
601.0
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
598.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
593.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
593.2
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
592.2
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
590.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
589.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
583.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
582.1
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
581.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
576.3
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
575.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
574.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
572.2
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
569.0
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
565.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
564.5
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
564.2
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
563.5
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
562.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
562.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
561.4
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
559.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
559.5
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
556.0
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
555.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
546.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
542.3
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
542.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
540.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
539.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
536.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
536.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
536.2
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
532.7
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
531.6
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
528.0
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
527.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
526.9
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
526.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
525.1
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
518.8
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
515.6
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
513.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
513.1
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
511.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
510.7
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
502.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
501.7
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
501.5
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
500.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
495.1
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
492.9
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
491.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
491.2
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
484.5
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
483.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
481.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
480.8
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
480.1
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
474.4
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
472.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
469.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
467.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
463.5
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
462.7
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
461.9
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
461.1
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
460.6
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
458.8
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
458.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
458.2
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
453.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
452.7
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
451.9
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
450.6
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
450.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
446.9
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
445.9
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
437.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
437.8
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
437.4
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
433.0
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
424.1
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
414.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
414.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
402.4
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
402.2
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
400.7
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
399.0
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
392.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
392.2
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
388.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
383.8
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
383.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
376.0
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
366.8
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
360.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
351.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
288.9
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
281.4
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
154.3
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 118.0
Samples: 2
Max nTPM: 152.1
Min nTPM: 83.9
Sample A
83.9
Sample B
152.1
Ventral spinal cord nTPM: 154.3
Samples: 1
Max nTPM: 154.3
Min nTPM: 154.3
Sample A
154.3
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
334.2
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 334.2
Samples: 4
Max nTPM: 521.2
Min nTPM: 207.1
Sample A
Female
207.1
Sample B
Female
357.6
Sample C
Male
521.2
Sample D
Male
250.8
Ventral spinal cord nTPM: 297.6
Samples: 4
Max nTPM: 337.3
Min nTPM: 240.4
Sample A
Female
240.4
Sample B
Female
331.2
Sample C
Male
337.3
Sample D
Male
281.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
193.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 193.2
Samples: 4
Max nTPM: 196.5
Min nTPM: 190.9
Sample A
190.9
Sample B
191.1
Sample C
196.5
Sample D
194.3
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
166.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 166.6
Samples: 4
Max nTPM: 172.5
Min nTPM: 160.5
Sample A
165.6
Sample A
167.8
Sample A
160.5
Sample A
172.5
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The Human Protein Atlas project is funded
