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  • TISSUE

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  • MT3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2335.8 nTPM
HPA Brain:980.6 nTPM
GTEx:2335.8 nTPM
FANTOM5:375.6 Scaled Tags Per Million
Pig:1332.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

980.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 895.8
1981 Female, age 72, midline 1103.8
2194 Female, age 79, both hemispheres 1091.6
2048 Male, age 55, midline 877.3
2816 Male, age 47, midline 744.0
2565 Male, age 75, midline 662.5
Cervical spinal cord, dorsal horn
nTPM: 980.6
2173 Female, age 72, unknown 1491.0
2296 Male, age 66, both hemispheres 1035.9
1877 Male, age 55, unknown 956.4
2069 Male, age 47, both hemispheres 918.3
2297 Male, age 75, both hemispheres 813.3
2721 Male, age 90, both hemispheres 668.8
Cervical spinal cord, ventral horn
nTPM: 967.1
2068 Male, age 55, unknown 1089.3
2480 Male, age 75, both hemispheres 1063.0
2295 Male, age 66, both hemispheres 961.8
2820 Female, age 79, both hemispheres 948.9
2809 Male, age 90, both hemispheres 895.4
2098 Female, age 72, unknown 844.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2335.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 2335.8
Samples: 204

Max nTPM: 7507.7
Min nTPM: 566.8
Std nTPM: 1171.3
Median nTPM: 2014.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 7507.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 7432.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 7243.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 7222.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 5392.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4897.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 4843.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 4804.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 4769.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 4696.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 4363.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 4290.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 4207.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4052.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 3920.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 3819.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 3808.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3692.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 3678.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 3658.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 3650.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 3643.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 3625.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 3591.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 3577.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 3560.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 3475.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 3424.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 3417.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 3416.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 3413.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3372.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 3368.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 3351.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 3348.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 3283.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3276.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 3236.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 3179.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 3149.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 3113.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3101.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 3100.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3077.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3061.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 3022.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 3018.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 3002.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 2987.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 2929.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 2926.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2904.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2862.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 2813.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 2794.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2783.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 2774.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 2773.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2761.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 2743.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 2667.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 2655.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 2606.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2553.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 2551.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 2536.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 2515.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2515.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2466.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 2449.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 2435.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2424.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 2403.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 2396.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2392.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 2376.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 2362.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 2342.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 2338.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 2336.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2304.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 2293.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2282.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2269.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2266.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2252.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 2228.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2220.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 2207.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2199.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2189.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 2182.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2178.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 2153.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 2135.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2103.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2097.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 2095.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 2088.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 2041.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 2018.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 2017.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 2011.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1975.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1970.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1963.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1953.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1948.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1948.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1937.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1933.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1925.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1918.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1915.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1912.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1846.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 1840.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1840.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1836.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1831.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1823.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1820.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1804.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1799.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1786.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1761.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1761.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1755.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1744.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1743.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1736.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1733.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1733.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1732.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1723.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 1717.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1707.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1705.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1703.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1699.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1694.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 1690.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1690.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1673.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1668.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1657.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1645.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1639.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1636.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1632.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1631.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1609.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 1600.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1598.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1571.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1562.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1551.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1548.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 1544.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1542.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1536.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1524.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1436.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1431.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1420.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1395.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1371.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1363.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1362.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1361.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1356.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1355.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1354.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1353.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1351.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1276.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 1265.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1264.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1257.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1240.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1205.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1203.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1202.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1161.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1160.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1152.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1137.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1131.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1117.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1110.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1104.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1083.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1081.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1076.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1067.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1061.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 999.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 935.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 933.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 914.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 896.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 858.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 801.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 566.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

375.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 375.6
FF:10159-103A6 76 years, female 401.1
FF:10181-103D1 60 years, female 350.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1332.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 994.5
Samples: 4

Max nTPM: 1036.3
Min nTPM: 939.8
Sample A Female 1024.1
Sample B Female 939.8
Sample C Male 1036.3
Sample D Male 977.7
Ventral spinal cord
nTPM: 1332.4
Samples: 4

Max nTPM: 1645.8
Min nTPM: 1080.2
Sample A Female 1229.2
Sample B Female 1374.4
Sample C Male 1645.8
Sample D Male 1080.2

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