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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:7006.0 nTPM
HPA Brain:1581.1 nTPM
GTEx:7006.0 nTPM
FANTOM5:903.9 Scaled Tags Per Million
Pig:1787.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1581.1
Sample id Sample description nTPM
Amygdala
nTPM: 1581.1
2514 Male, age 75, right hemisphere 2058.1
2695 Female, age 67, right hemisphere 1532.0
2814 Male, age 76, right hemisphere 1484.4
2517 Female, age 94, left hemisphere 1456.7
1987 Female, age 91, left hemisphere 1374.2
Basal amygdala
nTPM: 1350.8
2609 Male, age 75, right hemisphere 2465.7
2110 Male, age 80, left hemisphere 1510.4
1955 Male, age 76, both hemispheres 1297.8
2243 Female, age 91, right hemisphere 1161.2
2685 Female, age 94, left hemisphere 958.1
2827 Female, age 67, right hemisphere 711.6
Central amygdala
nTPM: 1488.3
2515 Male, age 75, right hemisphere 1967.6
1905 Male, age 76, both hemispheres 1624.2
2826 Female, age 94, left hemisphere 1512.6
2239 Male, age 80, left hemisphere 1345.6
2701 Female, age 91, right hemisphere 991.5
Corticomedial amygdala
nTPM: 1386.2
2428 Male, age 75, right hemisphere 2317.7
2829 Male, age 80, left hemisphere 1697.5
2429 Female, age 94, left hemisphere 1307.4
2242 Female, age 91, right hemisphere 1069.4
2240 Male, age 76, both hemispheres 1056.4
2535 Female, age 67, right hemisphere 868.6
Lateral amygdala
nTPM: 1359.2
2516 Male, age 75, right hemisphere 2369.9
2256 Male, age 80, left hemisphere 1454.9
1883 Male, age 76, both hemispheres 1294.7
2534 Female, age 94, left hemisphere 1288.9
2255 Female, age 91, right hemisphere 1096.1
2830 Female, age 67, right hemisphere 650.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7006.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 7006.0
Samples: 181

Max nTPM: 21163.7
Min nTPM: 1863.1
Std nTPM: 3325.0
Median nTPM: 6226.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 21163.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 20220.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 18108.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 17548.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 17267.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 16831.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 16256.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 15192.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 14715.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 12690.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 12656.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 11739.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 11434.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 11409.3
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 11374.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 10953.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 10851.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 10764.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 10710.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 10594.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 10541.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 10339.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 10301.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10049.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9985.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 9897.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 9822.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 9503.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 9497.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 9460.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 9335.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 9284.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 9279.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 9275.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 9226.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 9021.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 8935.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 8916.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 8899.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 8855.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 8825.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 8778.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 8731.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 8583.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 8578.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 8498.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 8415.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 8337.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 8267.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 8219.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 8213.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 8172.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 8158.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 7904.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 7826.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 7784.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 7644.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 7511.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 7462.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 7418.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 7385.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 7366.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 7330.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 7323.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 7314.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 7298.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 7234.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 7230.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 7229.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7225.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 7147.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 7093.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 7008.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 6966.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 6892.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 6840.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6832.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 6825.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 6793.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 6698.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 6697.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 6694.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 6690.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 6655.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 6562.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 6557.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 6543.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 6515.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 6379.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 6366.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 6226.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 6205.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 6132.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 6075.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 6073.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 6061.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 6031.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 5964.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 5922.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 5896.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 5893.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 5887.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 5827.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 5796.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 5789.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 5752.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 5673.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 5632.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 5546.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 5532.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 5505.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 5494.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 5483.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 5428.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 5409.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 5396.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 5393.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 5366.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 5335.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 5298.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 5287.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 5214.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 5208.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 5190.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 5153.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 5142.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 5101.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 5099.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 5069.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 5038.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 5028.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 5010.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 4990.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 4980.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 4858.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 4847.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 4704.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 4693.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 4692.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 4667.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 4656.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 4546.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 4545.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 4529.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 4476.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 4462.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 4455.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 4444.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 4374.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 4307.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 4289.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 4233.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 4222.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 4221.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 4211.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 4189.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 4146.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 3898.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3892.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3745.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 3713.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 3679.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3612.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3587.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 3567.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 3554.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 3522.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3490.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 3437.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 3348.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 3215.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 3186.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 3043.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2990.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2920.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2868.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2746.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2714.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2639.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2569.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1863.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

903.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 903.9
FF:10151-102I7 76 years, female 903.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1787.8
Pig sample Sample description nTPM
Amygdala
nTPM: 1787.8
Samples: 4

Max nTPM: 2545.7
Min nTPM: 1135.6
Sample A Female 2545.7
Sample B Female 1661.1
Sample C Male 1808.8
Sample D Male 1135.6

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