MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5609.4 nTPM
HPA Brain:1319.1 nTPM
GTEx:5609.4 nTPM
FANTOM5:791.3 Scaled Tags Per Million
Pig:1445.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1319.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1077.9
2828 Female, age 72, unknown 1484.7
2586 Male, age 75, left hemisphere 1372.3
2019 Male, age 18, unknown 1213.1
2411 Female, age 72, unknown 1116.7
1827 Male, age 72, unknown 1097.9
1870 Female, age 42, unknown 1018.0
1833 Male, age 53, unknown 995.6
1830 Male, age 51, unknown 874.0
2219 Male, age 76, both hemispheres 835.9
2666 Male, age 74, left hemisphere 771.3
Dorsal raphe nucleus
nTPM: 1304.8
2298 Female, age 72, unknown 1461.2
2047 Male, age 72, unknown 1342.2
1828 Male, age 53, unknown 1313.9
2750 Male, age 76, both hemispheres 1230.8
2016 Female, age 72, unknown 1176.1
Inferior colliculus
nTPM: 1153.0
2097 Female, age 72, unknown 1420.8
1890 Male, age 53, unknown 1256.0
1848 Female, age 42, unknown 1068.7
2849 Male, age 72, unknown 866.3
Median raphe nucleus
nTPM: 1120.3
2220 Male, age 76, midline 1120.3
Periaquaductal grey, anterior
nTPM: 1069.2
1795 Male, age 51, unknown 1174.1
1947 Male, age 18, unknown 1026.5
2502 Female, age 75, unknown 1007.0
Periaquaductal grey, dorsal
nTPM: 1082.3
1840 Male, age 53, unknown 1182.8
2464 Female, age 72, unknown 1163.8
2850 Male, age 76, both hemispheres 1004.1
1831 Male, age 72, unknown 978.5
Periaquaductal grey, lateral
nTPM: 987.5
2140 Male, age 76, both hemispheres 1133.5
2053 Male, age 18, unknown 1022.2
2272 Male, age 74, both hemispheres 806.7
Pretectal area
nTPM: 1298.1
1817 Female, age 42, unknown 1589.5
2667 Female, age 75, unknown 1547.2
1816 Male, age 51, unknown 1462.0
1944 Female, age 72, unknown 1428.6
2007 Male, age 72, unknown 1428.0
2316 Male, age 76, right hemisphere 1329.2
1815 Male, age 53, unknown 1298.9
2224 Female, age 72, unknown 1173.7
2273 Male, age 74, both hemispheres 1160.1
2825 Male, age 18, unknown 1033.3
2407 Male, age 75, both hemispheres 828.4
Red nucleus
nTPM: 1319.1
2503 Female, age 72, unknown 1721.2
1821 Female, age 72, unknown 1649.0
1954 Female, age 42, unknown 1438.3
2823 Male, age 76, right hemisphere 1415.5
2227 Male, age 72, unknown 1397.5
2769 Male, age 72, unknown 1331.7
1904 Male, age 53, unknown 1307.5
2588 Male, age 74, left hemisphere 1273.3
1865 Male, age 51, unknown 1254.8
2785 Male, age 18, unknown 1215.2
2725 Female, age 75, unknown 1139.7
2584 Male, age 75, left hemisphere 686.0
Substantia nigra
nTPM: 1302.5
1916 Female, age 42, unknown 1729.9
1851 Male, age 51, unknown 1584.6
2699 Male, age 18, unknown 1435.1
2241 Male, age 72, unknown 1356.2
1889 Female, age 72, unknown 1341.6
2409 Female, age 72, unknown 1184.9
2665 Male, age 74, both hemispheres 1154.8
1941 Male, age 53, unknown 1105.1
2590 Female, age 75, unknown 1088.5
2583 Male, age 75, right hemisphere 1044.2
Superior colliculus
nTPM: 1188.5
2087 Female, age 72, unknown 1442.4
2668 Female, age 75, unknown 1377.7
1796 Male, age 53, unknown 1352.3
1995 Male, age 72, unknown 1202.6
2261 Male, age 18, unknown 1198.9
2664 Male, age 75, both hemispheres 1183.9
1913 Female, age 42, unknown 1142.5
1895 Male, age 76, right hemisphere 1026.9
1839 Male, age 51, unknown 989.5
2587 Male, age 74, left hemisphere 968.0
Ventral tegmental area
nTPM: 1172.5
1915 Female, age 42, unknown 1380.2
2410 Female, age 72, unknown 1305.5
2223 Female, age 72, unknown 1184.5
1942 Male, age 51, unknown 1109.9
2218 Male, age 76, both hemispheres 1064.1
2021 Male, age 53, unknown 990.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5609.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5609.4
Samples: 183

Max nTPM: 29112.3
Min nTPM: 1480.7
Std nTPM: 3288.6
Median nTPM: 4936.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 29112.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 20788.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 16548.8
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 14758.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 13167.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13160.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 12587.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 11285.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 10871.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 10493.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 10226.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 791.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 791.3
FF:10158-103A5 76 years, female 791.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1445.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1228.4
Samples: 4

Max nTPM: 1715.3
Min nTPM: 1023.2
Sample A Female 1715.3
Sample B Female 1023.2
Sample C Male 1143.7
Sample D Male 1031.2
Midbrain
nTPM: 1445.2
Samples: 4

Max nTPM: 1905.2
Min nTPM: 965.9
Sample A Female 1905.2
Sample B Female 1382.3
Sample C Male 1527.5
Sample D Male 965.9
Periaqueductal gray
nTPM: 1223.1
Samples: 3

Max nTPM: 1314.7
Min nTPM: 1056.8
Sample B Female 1297.9
Sample C Male 1314.7
Sample D Male 1056.8
Superior colliculi
nTPM: 1274.2
Samples: 4

Max nTPM: 1718.5
Min nTPM: 603.1
Sample A Female 1718.5
Sample B Female 603.1
Sample C Male 1559.7
Sample D Male 1215.5

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