On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
5609.4
nTPM
HPA Brain:
1321.6
nTPM
GTEx:
5609.4
nTPM
FANTOM5:
791.3
Scaled Tags Per Million
Rat:
690.5
nTPM
Pig:
1299.4
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1321.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1081.0
2828
Female, age 72, unknown
1487.9
2586
Male, age 75, left hemisphere
1391.8
2019
Male, age 18, unknown
1215.2
2411
Female, age 72, unknown
1119.7
1827
Male, age 72, unknown
1100.0
1870
Female, age 42, unknown
1020.2
1833
Male, age 53, unknown
997.5
1830
Male, age 51, unknown
875.8
2219
Male, age 76, both hemispheres
828.9
2666
Male, age 74, left hemisphere
773.3
Dorsal raphe nucleus nTPM: 1305.2
2298
Female, age 72, unknown
1465.7
2047
Male, age 72, unknown
1344.3
1828
Male, age 53, unknown
1316.4
2750
Male, age 76, both hemispheres
1220.4
2016
Female, age 72, unknown
1179.3
Inferior colliculus nTPM: 1155.8
2097
Female, age 72, unknown
1425.0
1890
Male, age 53, unknown
1258.3
1848
Female, age 42, unknown
1071.5
2849
Male, age 72, unknown
868.2
Median raphe nucleus nTPM: 1110.7
2220
Male, age 76, midline
1110.7
Periaquaductal grey, anterior nTPM: 1071.8
1795
Male, age 51, unknown
1177.1
1947
Male, age 18, unknown
1028.4
2502
Female, age 75, unknown
1009.8
Periaquaductal grey, dorsal nTPM: 1082.1
1840
Male, age 53, unknown
1184.7
2464
Female, age 72, unknown
1167.0
2850
Male, age 76, both hemispheres
996.0
1831
Male, age 72, unknown
980.6
Periaquaductal grey, lateral nTPM: 985.9
2140
Male, age 76, both hemispheres
1124.4
2053
Male, age 18, unknown
1024.4
2272
Male, age 74, both hemispheres
809.0
Pretectal area nTPM: 1300.6
1817
Female, age 42, unknown
1593.4
2667
Female, age 75, unknown
1550.8
1816
Male, age 51, unknown
1464.5
1944
Female, age 72, unknown
1431.3
2007
Male, age 72, unknown
1431.2
2316
Male, age 76, right hemisphere
1318.2
1815
Male, age 53, unknown
1300.5
2224
Female, age 72, unknown
1177.5
2273
Male, age 74, both hemispheres
1163.5
2825
Male, age 18, unknown
1035.5
2407
Male, age 75, both hemispheres
840.5
Red nucleus nTPM: 1321.6
2503
Female, age 72, unknown
1725.3
1821
Female, age 72, unknown
1652.3
1954
Female, age 42, unknown
1442.1
2823
Male, age 76, right hemisphere
1403.9
2227
Male, age 72, unknown
1399.9
2769
Male, age 72, unknown
1334.5
1904
Male, age 53, unknown
1310.7
2588
Male, age 74, left hemisphere
1275.8
1865
Male, age 51, unknown
1257.8
2785
Male, age 18, unknown
1218.0
2725
Female, age 75, unknown
1143.0
2584
Male, age 75, left hemisphere
695.8
Substantia nigra nTPM: 1306.8
1916
Female, age 42, unknown
1735.5
1851
Male, age 51, unknown
1588.4
2699
Male, age 18, unknown
1438.4
2241
Male, age 72, unknown
1358.3
1889
Female, age 72, unknown
1344.9
2409
Female, age 72, unknown
1187.8
2665
Male, age 74, both hemispheres
1158.1
1941
Male, age 53, unknown
1106.7
2590
Female, age 75, unknown
1091.0
2583
Male, age 75, right hemisphere
1058.5
Superior colliculus nTPM: 1191.6
2087
Female, age 72, unknown
1445.5
2668
Female, age 75, unknown
1381.5
1796
Male, age 53, unknown
1354.8
1995
Male, age 72, unknown
1205.1
2261
Male, age 18, unknown
1201.3
2664
Male, age 75, both hemispheres
1201.3
1913
Female, age 42, unknown
1146.0
1895
Male, age 76, right hemisphere
1018.1
1839
Male, age 51, unknown
991.8
2587
Male, age 74, left hemisphere
970.6
Ventral tegmental area nTPM: 1173.4
1915
Female, age 42, unknown
1383.8
2410
Female, age 72, unknown
1309.6
2223
Female, age 72, unknown
1187.2
1942
Male, age 51, unknown
1112.7
2218
Male, age 76, both hemispheres
1055.0
2021
Male, age 53, unknown
992.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
5609.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 5609.4
Samples: 183
Max nTPM: 29112.3
Min nTPM: 1480.7
Std nTPM: 3288.6
Median nTPM: 4936.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
29112.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
20788.2
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
16548.8
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
14758.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
13167.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
13160.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
12587.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
11285.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
10871.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10493.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
10226.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
10001.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
9980.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
9964.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
9886.2
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
9762.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
9677.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
9575.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
9562.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
9534.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
9242.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
9118.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
8987.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
8863.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
8726.6
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
8610.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
8208.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8159.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
7974.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
7766.8
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
7675.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
7643.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
7573.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
7517.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
7308.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
7082.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
6822.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
6796.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
6734.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
6587.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
6467.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
6447.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
6422.4
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
6386.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
6364.2
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
6295.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
6255.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
6159.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
6057.5
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
6055.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
6043.9
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
6038.7
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
6016.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
5979.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
5963.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
5958.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
5957.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
5897.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
5887.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
5773.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
5726.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
5706.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5698.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
5618.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
5603.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
5551.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
5525.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
5520.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
5467.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
5423.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
5419.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
5390.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
5323.5
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
5303.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
5289.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
5285.8
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
5266.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
5258.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
5255.3
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
5247.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
5240.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
5227.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
5134.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
5130.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
5087.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
4996.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
4969.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
4968.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
4968.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
4966.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
4947.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
4936.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
4893.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
4890.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4821.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
4819.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
4817.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
4808.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
4792.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
4770.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
4748.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
4709.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
4586.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
4580.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
4533.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
4495.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4473.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
4462.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
4444.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
4414.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
4400.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
4375.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
4338.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4334.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
4295.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
4280.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
4233.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
4224.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
4220.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
4212.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
4177.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
4165.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
4154.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4152.3
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
4097.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
4075.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
4031.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
4019.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3961.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
3946.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
3901.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
3891.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
3866.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
3832.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3792.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
3752.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
3708.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
3705.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
3701.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3677.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3647.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
3638.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
3618.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
3612.7
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
3520.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3520.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
3424.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
3407.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
3324.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
3303.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
3224.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
3222.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
3204.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
3199.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
3198.6
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
3165.9
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
3164.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
3161.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
3018.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2923.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
2880.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
2804.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2751.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
2684.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
2684.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2563.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2510.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
2504.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
2490.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2483.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
2480.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
2473.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
2437.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
2339.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
2320.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
2279.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
2217.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
2089.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2025.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
2022.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
2006.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1675.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1480.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1299.4
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1299.4
Samples: 3
Max nTPM: 1725.1
Min nTPM: 1026.4
Sample A
Female
1725.1
Sample B
Female
1026.4
Sample C
Male
1146.8
Midbrain nTPM: 1295.6
Samples: 3
Max nTPM: 1531.9
Min nTPM: 967.1
Sample B
Female
1387.9
Sample C
Male
1531.9
Sample D
Male
967.1
Periaqueductal gray nTPM: 1227.3
Samples: 3
Max nTPM: 1321.7
Min nTPM: 1058.6
Sample B
Female
1301.6
Sample C
Male
1321.7
Sample D
Male
1058.6
Superior colliculi nTPM: 1281.2
Samples: 4
Max nTPM: 1730.1
Min nTPM: 606.0
Sample A
Female
1730.1
Sample B
Female
606.0
Sample C
Male
1567.2
Sample D
Male
1221.3
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
690.5
Rat sample
Sample description
nTPM
Midbrain nTPM: 690.5
Samples: 4
Max nTPM: 726.4
Min nTPM: 649.1
Sample A
726.4
Sample A
691.0
Sample A
649.1
Sample A
695.5
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The Human Protein Atlas project is funded
