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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:888.0 nTPM
HPA Brain:317.4 nTPM
GTEx:888.0 nTPM
FANTOM5:709.3 Scaled Tags Per Million
Pig:173.7 nTPM
Mouse:319.6 nTPM
Allen mouse:18.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.4
Sample id Sample description nTPM
Amygdala
nTPM: 317.4
2514 Male, age 75, right hemisphere 383.4
1987 Female, age 91, left hemisphere 346.6
2814 Male, age 76, right hemisphere 308.6
2517 Female, age 94, left hemisphere 290.4
2695 Female, age 67, right hemisphere 258.0
Basal amygdala
nTPM: 263.8
2609 Male, age 75, right hemisphere 315.0
2243 Female, age 91, right hemisphere 305.9
1955 Male, age 76, both hemispheres 281.6
2110 Male, age 80, left hemisphere 279.0
2685 Female, age 94, left hemisphere 253.1
2827 Female, age 67, right hemisphere 148.2
Central amygdala
nTPM: 261.9
2239 Male, age 80, left hemisphere 298.6
2515 Male, age 75, right hemisphere 268.2
1905 Male, age 76, both hemispheres 264.7
2701 Female, age 91, right hemisphere 245.8
2826 Female, age 94, left hemisphere 232.2
Corticomedial amygdala
nTPM: 311.7
2829 Male, age 80, left hemisphere 402.0
2242 Female, age 91, right hemisphere 361.2
2428 Male, age 75, right hemisphere 345.7
2429 Female, age 94, left hemisphere 304.9
2240 Male, age 76, both hemispheres 282.2
2535 Female, age 67, right hemisphere 174.0
Lateral amygdala
nTPM: 242.3
2516 Male, age 75, right hemisphere 324.5
1883 Male, age 76, both hemispheres 315.9
2534 Female, age 94, left hemisphere 238.1
2255 Female, age 91, right hemisphere 212.0
2256 Male, age 80, left hemisphere 204.6
2830 Female, age 67, right hemisphere 158.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

888.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 888.0
Samples: 181

Max nTPM: 3088.3
Min nTPM: 364.0
Std nTPM: 373.3
Median nTPM: 805.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3088.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2224.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2149.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2096.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1933.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1859.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1701.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1601.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1570.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1569.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1499.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1477.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1392.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1371.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1356.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1356.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1346.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1342.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1333.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1326.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1318.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1301.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1271.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1255.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1218.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1215.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1211.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1158.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1151.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1149.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1148.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1148.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1136.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1129.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1120.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1099.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1099.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1079.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1078.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1071.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1069.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1068.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1066.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1062.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1061.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1055.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1055.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1038.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1017.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 996.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 982.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 979.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 978.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 971.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 953.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 952.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 947.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 937.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 937.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 932.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 929.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 926.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 905.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 888.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 887.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 878.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 876.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 874.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 868.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 867.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 859.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 857.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 856.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 855.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 852.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 850.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 845.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 841.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 831.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 829.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 824.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 822.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 821.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 821.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 820.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 817.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 813.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 811.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 811.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 810.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 805.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 805.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 803.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 803.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 799.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 793.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 783.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 777.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 775.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 774.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 764.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 758.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 757.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 754.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 747.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 742.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 741.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 740.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 737.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 736.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 734.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 734.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 733.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 732.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 731.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 731.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 722.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 722.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 722.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 722.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 721.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 719.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 715.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 714.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 714.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 706.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 702.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 702.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 693.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 690.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 688.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 688.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 684.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 667.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 667.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 664.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 658.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 657.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 654.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 652.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 643.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 639.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 637.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 634.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 616.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 614.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 606.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 604.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 598.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 598.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 592.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 589.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 581.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 576.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 575.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 562.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 561.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 555.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 554.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 554.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 542.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 540.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 532.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 531.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 527.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 511.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 492.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 490.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 488.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 488.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 483.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 467.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 454.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 453.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 452.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 434.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 404.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 386.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 372.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 368.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 364.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

709.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 709.3
FF:10151-102I7 76 years, female 709.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

173.7
Pig sample Sample description nTPM
Amygdala
nTPM: 173.7
Samples: 4

Max nTPM: 252.2
Min nTPM: 122.4
Sample A Female 252.2
Sample B Female 127.6
Sample C Male 122.4
Sample D Male 192.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 319.7
Samples: 4

Max nTPM: 344.8
Min nTPM: 299.0
Sample A Male 320.3
Sample B Male 344.8
Sample C Female 299.0
Sample D Female 314.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.6
81600140 Antisense, RP_080312_03_A05, Mouse strain C57BL/6J (56 days, male) 19.8
69627021 Antisense, RP_050428_01_G02, Mouse strain C57BL/6J (56 days, male) 17.4

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