MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:677.5 nTPM
HPA Brain:359.8 nTPM
GTEx:677.5 nTPM
FANTOM5:556.5 Scaled Tags Per Million
Pig:204.5 nTPM
Mouse:155.9 nTPM
Allen mouse:8.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 359.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 258.4
2411 Female, age 72, unknown 362.1
1870 Female, age 42, unknown 340.6
1833 Male, age 53, unknown 295.0
1827 Male, age 72, unknown 284.1
1830 Male, age 51, unknown 269.6
2019 Male, age 18, unknown 235.9
2219 Male, age 76, both hemispheres 230.0
2828 Female, age 72, unknown 229.0
2586 Male, age 75, left hemisphere 175.1
2666 Male, age 74, left hemisphere 162.2
Dorsal raphe nucleus
nTPM: 358.2
2298 Female, age 72, unknown 484.8
2047 Male, age 72, unknown 376.5
2750 Male, age 76, both hemispheres 320.7
1828 Male, age 53, unknown 306.1
2016 Female, age 72, unknown 302.8
Inferior colliculus
nTPM: 290.1
2097 Female, age 72, unknown 316.8
2849 Male, age 72, unknown 307.7
1848 Female, age 42, unknown 289.1
1890 Male, age 53, unknown 246.8
Median raphe nucleus
nTPM: 346.2
2220 Male, age 76, midline 346.2
Periaquaductal grey, anterior
nTPM: 288.0
1947 Male, age 18, unknown 316.5
1795 Male, age 51, unknown 278.0
2502 Female, age 75, unknown 269.5
Periaquaductal grey, dorsal
nTPM: 318.1
2850 Male, age 76, both hemispheres 388.3
1840 Male, age 53, unknown 351.8
2464 Female, age 72, unknown 278.1
1831 Male, age 72, unknown 254.1
Periaquaductal grey, lateral
nTPM: 359.8
2272 Male, age 74, both hemispheres 436.7
2140 Male, age 76, both hemispheres 326.2
2053 Male, age 18, unknown 316.6
Pretectal area
nTPM: 300.9
2273 Male, age 74, both hemispheres 469.1
2224 Female, age 72, unknown 367.0
2667 Female, age 75, unknown 315.7
2825 Male, age 18, unknown 315.4
1817 Female, age 42, unknown 276.2
1944 Female, age 72, unknown 274.8
1815 Male, age 53, unknown 271.4
1816 Male, age 51, unknown 263.2
2007 Male, age 72, unknown 261.3
2407 Male, age 75, both hemispheres 252.2
2316 Male, age 76, right hemisphere 243.6
Red nucleus
nTPM: 251.8
1821 Female, age 72, unknown 334.1
2725 Female, age 75, unknown 292.6
1954 Female, age 42, unknown 269.3
1865 Male, age 51, unknown 262.5
2503 Female, age 72, unknown 255.7
1904 Male, age 53, unknown 253.2
2227 Male, age 72, unknown 248.9
2769 Male, age 72, unknown 247.5
2823 Male, age 76, right hemisphere 241.9
2785 Male, age 18, unknown 238.3
2584 Male, age 75, left hemisphere 189.8
2588 Male, age 74, left hemisphere 188.2
Substantia nigra
nTPM: 278.2
1916 Female, age 42, unknown 335.0
1941 Male, age 53, unknown 329.1
2241 Male, age 72, unknown 322.3
1889 Female, age 72, unknown 316.9
1851 Male, age 51, unknown 312.7
2699 Male, age 18, unknown 286.6
2409 Female, age 72, unknown 256.4
2590 Female, age 75, unknown 237.2
2583 Male, age 75, right hemisphere 199.2
2665 Male, age 74, both hemispheres 186.7
Superior colliculus
nTPM: 270.2
2587 Male, age 74, left hemisphere 360.0
1895 Male, age 76, right hemisphere 291.3
1796 Male, age 53, unknown 284.3
1913 Female, age 42, unknown 275.1
1839 Male, age 51, unknown 274.5
2261 Male, age 18, unknown 270.4
2668 Female, age 75, unknown 261.2
1995 Male, age 72, unknown 246.4
2087 Female, age 72, unknown 230.0
2664 Male, age 75, both hemispheres 209.1
Ventral tegmental area
nTPM: 306.9
2410 Female, age 72, unknown 350.7
2223 Female, age 72, unknown 341.1
2218 Male, age 76, both hemispheres 312.1
1915 Female, age 42, unknown 311.9
1942 Male, age 51, unknown 265.6
2021 Male, age 53, unknown 259.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 677.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 677.5
Samples: 183

Max nTPM: 1731.0
Min nTPM: 242.9
Std nTPM: 207.6
Median nTPM: 641.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1731.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1542.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1402.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1344.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1286.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1175.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1116.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1098.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1094.7
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1080.3
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 1046.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 556.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 556.5
FF:10158-103A5 76 years, female 556.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 204.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 195.9
Samples: 4

Max nTPM: 245.8
Min nTPM: 163.3
Sample A Female 245.8
Sample B Female 163.3
Sample C Male 176.7
Sample D Male 197.6
Midbrain
nTPM: 204.5
Samples: 4

Max nTPM: 322.8
Min nTPM: 155.3
Sample A Female 322.8
Sample B Female 175.4
Sample C Male 155.3
Sample D Male 164.3
Periaqueductal gray
nTPM: 183.0
Samples: 3

Max nTPM: 205.1
Min nTPM: 157.6
Sample B Female 157.6
Sample C Male 186.2
Sample D Male 205.1
Superior colliculi
nTPM: 187.9
Samples: 4

Max nTPM: 227.4
Min nTPM: 155.1
Sample A Female 227.4
Sample B Female 155.1
Sample C Male 183.7
Sample D Male 185.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 155.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 155.9
Samples: 4

Max nTPM: 162.0
Min nTPM: 148.5
Sample A Male 154.0
Sample B Male 159.2
Sample C Female 148.5
Sample D Female 162.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
69627021 Antisense, RP_050428_01_G02, Mouse strain C57BL/6J (56 days, male) 9.8
81600140 Antisense, RP_080312_03_A05, Mouse strain C57BL/6J (56 days, male) 7.9

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