On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
677.5
nTPM
HPA Brain:
360.2
nTPM
GTEx:
677.5
nTPM
FANTOM5:
556.5
Scaled Tags Per Million
Macaque:
312.6
nTPM
Mouse:
100.2
nTPM
Rat:
276.4
nTPM
Pig:
196.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
360.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 259.1
2411
Female, age 72, unknown
363.2
1870
Female, age 42, unknown
341.6
1833
Male, age 53, unknown
295.8
1827
Male, age 72, unknown
284.9
1830
Male, age 51, unknown
270.3
2019
Male, age 18, unknown
236.5
2828
Female, age 72, unknown
229.6
2219
Male, age 76, both hemispheres
229.1
2586
Male, age 75, left hemisphere
177.0
2666
Male, age 74, left hemisphere
162.7
Dorsal raphe nucleus nTPM: 358.8
2298
Female, age 72, unknown
486.4
2047
Male, age 72, unknown
377.4
2750
Male, age 76, both hemispheres
319.4
1828
Male, age 53, unknown
306.9
2016
Female, age 72, unknown
303.8
Inferior colliculus nTPM: 291.0
2097
Female, age 72, unknown
317.8
2849
Male, age 72, unknown
308.6
1848
Female, age 42, unknown
290.0
1890
Male, age 53, unknown
247.4
Median raphe nucleus nTPM: 344.7
2220
Male, age 76, midline
344.7
Periaquaductal grey, anterior nTPM: 288.8
1947
Male, age 18, unknown
317.3
1795
Male, age 51, unknown
278.8
2502
Female, age 75, unknown
270.3
Periaquaductal grey, dorsal nTPM: 318.3
2850
Male, age 76, both hemispheres
386.9
1840
Male, age 53, unknown
352.6
2464
Female, age 72, unknown
278.9
1831
Male, age 72, unknown
254.9
Periaquaductal grey, lateral nTPM: 360.2
2272
Male, age 74, both hemispheres
438.1
2140
Male, age 76, both hemispheres
324.9
2053
Male, age 18, unknown
317.5
Pretectal area nTPM: 301.8
2273
Male, age 74, both hemispheres
470.6
2224
Female, age 72, unknown
368.3
2667
Female, age 75, unknown
316.6
2825
Male, age 18, unknown
316.3
1817
Female, age 42, unknown
277.1
1944
Female, age 72, unknown
275.5
1815
Male, age 53, unknown
272.0
1816
Male, age 51, unknown
263.8
2007
Male, age 72, unknown
262.0
2407
Male, age 75, both hemispheres
255.0
2316
Male, age 76, right hemisphere
242.6
Red nucleus nTPM: 252.6
1821
Female, age 72, unknown
335.0
2725
Female, age 75, unknown
293.6
1954
Female, age 42, unknown
270.2
1865
Male, age 51, unknown
263.3
2503
Female, age 72, unknown
256.4
1904
Male, age 53, unknown
254.0
2227
Male, age 72, unknown
249.5
2769
Male, age 72, unknown
248.2
2823
Male, age 76, right hemisphere
240.9
2785
Male, age 18, unknown
239.0
2584
Male, age 75, left hemisphere
191.8
2588
Male, age 74, left hemisphere
188.6
Substantia nigra nTPM: 279.2
1916
Female, age 42, unknown
336.3
1941
Male, age 53, unknown
329.9
2241
Male, age 72, unknown
323.0
1889
Female, age 72, unknown
317.9
1851
Male, age 51, unknown
313.6
2699
Male, age 18, unknown
287.5
2409
Female, age 72, unknown
257.1
2590
Female, age 75, unknown
237.9
2583
Male, age 75, right hemisphere
201.2
2665
Male, age 74, both hemispheres
187.3
Superior colliculus nTPM: 271.0
2587
Male, age 74, left hemisphere
361.0
1895
Male, age 76, right hemisphere
290.0
1796
Male, age 53, unknown
285.1
1913
Female, age 42, unknown
276.1
1839
Male, age 51, unknown
275.3
2261
Male, age 18, unknown
271.1
2668
Female, age 75, unknown
262.1
1995
Male, age 72, unknown
247.1
2087
Female, age 72, unknown
230.7
2664
Male, age 75, both hemispheres
211.5
Ventral tegmental area nTPM: 307.4
2410
Female, age 72, unknown
351.9
2223
Female, age 72, unknown
342.1
1915
Female, age 42, unknown
312.9
2218
Male, age 76, both hemispheres
310.8
1942
Male, age 51, unknown
266.4
2021
Male, age 53, unknown
260.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
677.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 677.5
Samples: 183
Max nTPM: 1731.0
Min nTPM: 242.9
Std nTPM: 207.6
Median nTPM: 641.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1731.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1542.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1402.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1344.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1286.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1175.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1116.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1098.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1094.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1080.3
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
1046.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1029.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1020.4
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1001.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
941.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
938.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
903.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
902.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
897.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
890.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
870.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
865.0
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
850.3
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
845.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
842.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
835.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
833.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
832.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
828.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
822.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
818.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
804.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
803.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
801.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
798.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
794.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
788.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
781.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
780.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
778.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
775.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
764.0
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
763.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
762.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
758.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
757.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
754.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
750.1
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
748.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
739.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
739.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
734.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
733.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
733.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
731.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
710.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
709.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
708.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
705.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
704.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
701.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
698.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
696.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
694.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
694.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
692.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
689.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
686.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
685.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
678.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
675.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
675.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
674.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
673.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
670.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
670.0
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
669.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
668.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
668.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
668.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
665.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
662.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
657.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
657.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
655.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
655.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
654.5
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
653.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
645.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
643.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
642.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
641.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
638.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
635.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
633.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
632.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
630.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
627.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
627.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
626.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
625.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
624.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
622.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
620.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
620.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
618.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
618.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
615.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
615.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
611.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
610.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
610.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
607.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
605.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
604.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
603.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
602.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
602.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
597.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
597.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
594.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
594.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
593.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
588.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
584.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
582.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
580.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
579.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
575.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
575.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
574.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
568.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
567.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
566.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
564.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
562.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
561.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
560.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
559.8
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
554.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
553.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
549.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
547.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
538.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
538.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
534.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
529.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
527.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
527.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
525.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
523.5
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
511.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
510.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
510.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
507.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
502.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
498.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
498.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
497.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
496.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
494.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
489.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
485.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
479.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
474.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
471.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
460.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
459.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
451.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
450.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
446.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
436.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
433.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
432.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
426.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
401.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
394.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
391.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
378.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
372.8
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
367.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
268.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
242.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
312.6
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 214.7
Samples: 1
Max nTPM: 214.7
Min nTPM: 214.7
Sample A
214.7
Midbrain nTPM: 312.6
Samples: 1
Max nTPM: 312.6
Min nTPM: 312.6
Sample A
312.6
Superior colliculi nTPM: 223.7
Samples: 1
Max nTPM: 223.7
Min nTPM: 223.7
Sample A
223.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
196.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 196.3
Samples: 3
Max nTPM: 247.4
Min nTPM: 163.9
Sample A
Female
247.4
Sample B
Female
163.9
Sample C
Male
177.5
Midbrain nTPM: 165.5
Samples: 3
Max nTPM: 176.1
Min nTPM: 155.8
Sample B
Female
176.1
Sample C
Male
155.8
Sample D
Male
164.6
Periaqueductal gray nTPM: 183.4
Samples: 3
Max nTPM: 205.5
Min nTPM: 158.1
Sample B
Female
158.1
Sample C
Male
186.6
Sample D
Male
205.5
Superior colliculi nTPM: 189.0
Samples: 4
Max nTPM: 229.0
Min nTPM: 155.8
Sample A
Female
229.0
Sample B
Female
155.8
Sample C
Male
184.6
Sample D
Male
186.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 100.2
Samples: 4
Max nTPM: 103.2
Min nTPM: 98.6
Sample A
100.1
Sample B
98.6
Sample C
98.9
Sample D
103.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
276.4
Rat sample
Sample description
nTPM
Midbrain nTPM: 276.4
Samples: 4
Max nTPM: 286.4
Min nTPM: 267.8
Sample A
269.2
Sample A
282.3
Sample A
286.4
Sample A
267.8
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The Human Protein Atlas project is funded
