We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
DYNLL1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • DYNLL1
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:875.0 nTPM
HPA Brain:507.9 nTPM
GTEx:875.0 nTPM
FANTOM5:974.2 Scaled Tags Per Million
Pig:332.8 nTPM
Mouse:395.1 nTPM
Allen mouse:17.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

507.9
Sample id Sample description nTPM
Hippocampus
nTPM: 392.1
1898 Male, age 80, left hemisphere 562.3
1855 Male, age 76, left hemisphere 443.1
2529 Female, age 94, left hemisphere 373.0
2621 Female, age 67, right hemisphere 362.0
1911 Female, age 85, right hemisphere 346.9
2148 Female, age 91, left hemisphere 264.9
Dentate gyrus
nTPM: 371.3
2010 Male, age 76, both hemispheres 521.5
1927 Female, age 91, both hemispheres 440.7
2246 Female, age 85, both hemispheres 381.4
2528 Male, age 74, both hemispheres 327.1
2530 Female, age 94, left hemisphere 317.4
2531 Female, age 67, both hemispheres 240.0
Entorhinal gyrus
nTPM: 369.5
1938 Female, age 85, left hemisphere 535.0
2764 Male, age 80, right hemisphere 472.0
1787 Male, age 76, left hemisphere 421.6
2117 Female, age 91, right hemisphere 300.9
2613 Female, age 94, left hemisphere 267.9
2686 Male, age 75, right hemisphere 219.2
Hippocampus, CA1
nTPM: 476.4
2749 Male, age 80, left hemisphere 771.3
1873 Female, age 85, both hemispheres 478.6
2045 Male, age 76, both hemispheres 424.7
2527 Male, age 74, both hemispheres 403.0
2082 Female, age 91, right hemisphere 304.5
Hippocampus, CA2
nTPM: 408.1
1892 Male, age 76, both hemispheres 551.1
1963 Male, age 80, left hemisphere 518.2
2249 Male, age 74, both hemispheres 483.4
2437 Female, age 94, left hemisphere 316.8
1940 Female, age 85, left hemisphere 300.2
2113 Female, age 91, right hemisphere 279.0
Hippocampus, CA3
nTPM: 403.3
2137 Male, age 80, left hemisphere 602.3
1867 Male, age 76, both hemispheres 476.5
2436 Male, age 74, both hemispheres 466.1
1891 Female, age 85, both hemispheres 378.9
2620 Female, age 94, left hemisphere 296.4
2861 Female, age 67, both hemispheres 199.4
Parahippocampal cortex
nTPM: 365.8
1850 Male, age 80, both hemispheres 562.6
2018 Male, age 76, both hemispheres 452.3
1933 Female, age 85, both hemispheres 452.1
1990 Female, age 91, right hemisphere 405.8
2245 Female, age 91, both hemispheres 352.0
2250 Female, age 67, right hemisphere 349.7
2532 Female, age 72, left hemisphere 338.3
2692 Male, age 74, both hemispheres 272.1
2693 Female, age 94, both hemispheres 259.2
2622 Female, age 67, right hemisphere 214.0
Perirhinal gyrus
nTPM: 507.9
1847 Female, age 91, left hemisphere 615.7
1794 Male, age 80, right hemisphere 572.2
1841 Female, age 85, right hemisphere 559.4
2848 Male, age 76, right hemisphere 460.3
2521 Female, age 94, right hemisphere 331.7
Subiculum
nTPM: 383.0
1901 Male, age 80, both hemispheres 458.5
1977 Female, age 85, both hemispheres 453.3
2042 Male, age 76, both hemispheres 417.8
2438 Female, age 94, left hemisphere 401.3
2619 Male, age 74, both hemispheres 288.9
2729 Female, age 91, right hemisphere 278.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

875.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 875.0
Samples: 255

Max nTPM: 2246.0
Min nTPM: 224.0
Std nTPM: 339.0
Median nTPM: 819.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2246.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2144.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1987.2
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 1884.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1829.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1809.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 1773.7
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 1725.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1714.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1613.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1599.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1586.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 1545.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1483.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1442.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 1429.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1417.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 1409.2
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 1390.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 1387.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1386.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1381.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 1378.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1344.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1319.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1317.8
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1291.7
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 1269.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1265.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1264.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1238.9
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1234.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 1228.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1228.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 1211.3
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 1210.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 1209.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 1207.9
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 1197.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 1175.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 1168.3
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 1167.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1163.2
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 1159.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 1159.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1155.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 1155.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1154.9
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 1147.4
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 1136.6
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 1130.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1123.1
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 1118.7
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 1110.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1108.4
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1106.0
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 1093.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1092.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1090.1
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 1072.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 1067.5
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 1065.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 1041.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1037.1
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 1033.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1027.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 1026.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 1021.9
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 1010.6
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 1006.2
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 1004.3
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 1003.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1001.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 996.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 993.6
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 988.3
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 985.8
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 985.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 973.0
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 972.6
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 970.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 967.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 960.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 957.4
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 956.4
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 956.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 953.1
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 952.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 950.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 950.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 947.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 946.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 943.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 938.8
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 938.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 923.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 921.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 917.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 917.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 911.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 909.7
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 905.1
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 904.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 903.6
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 899.6
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 894.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 881.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 880.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 873.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 870.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 864.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 864.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 856.8
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 853.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 850.5
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 849.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 847.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 840.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 834.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 829.8
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 829.7
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 828.9
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 827.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 826.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 825.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 823.1
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 821.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 819.9
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 819.1
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 813.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 805.8
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 802.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 802.2
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 801.5
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 792.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 782.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 782.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 780.1
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 778.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 777.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 777.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 775.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 774.8
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 774.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 773.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 773.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 772.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 771.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 765.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 755.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 748.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 746.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 744.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 741.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 738.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 736.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 732.4
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 731.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 729.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 724.1
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 723.0
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 719.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 717.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 715.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 711.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 706.4
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 699.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 693.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 692.9
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 692.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 691.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 691.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 682.6
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 680.9
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 680.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 679.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 677.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 676.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 668.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 666.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 664.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 655.8
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 652.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 650.4
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 648.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 648.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 644.6
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 643.7
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 638.7
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 634.4
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 631.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 628.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 627.7
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 625.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 624.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 623.3
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 622.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 622.5
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 619.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 618.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 613.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 610.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 603.2
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 598.2
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 595.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 590.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 589.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 581.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 580.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 579.5
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 578.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 576.8
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 573.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 571.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 563.0
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 560.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 559.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 546.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 542.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 539.5
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 539.0
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 538.9
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 527.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 527.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 526.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 523.2
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 517.6
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 515.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 509.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 507.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 504.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 500.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 487.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 484.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 478.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 466.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 461.6
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 460.8
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 460.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 456.4
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 454.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 450.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 438.1
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 431.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 430.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 418.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 416.6
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 407.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 401.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 400.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 371.6
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 364.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 338.2
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 296.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 224.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

974.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 974.2
FF:10169-103B7 60 years, female 1320.0
FF:10153-102I9 76 years, female 628.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.8
Pig sample Sample description nTPM
Subiculum
nTPM: 208.1
Samples: 4

Max nTPM: 253.2
Min nTPM: 182.3
Sample A Female 253.2
Sample B Female 195.1
Sample C Male 182.3
Sample D Male 201.6
Dorsal hippocampus
nTPM: 332.8
Samples: 4

Max nTPM: 470.6
Min nTPM: 249.6
Sample A Female 470.6
Sample B Female 335.9
Sample C Male 275.0
Sample D Male 249.6
Entorhinal cortex
nTPM: 173.5
Samples: 4

Max nTPM: 194.4
Min nTPM: 158.4
Sample A Female 194.4
Sample B Female 181.9
Sample C Male 159.3
Sample D Male 158.4
Ventral hippocampus
nTPM: 289.4
Samples: 4

Max nTPM: 399.0
Min nTPM: 177.3
Sample A Female 309.0
Sample B Female 177.3
Sample C Male 272.2
Sample D Male 399.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

395.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 300.3
Samples: 4

Max nTPM: 342.3
Min nTPM: 259.5
Sample A Male 259.5
Sample B Male 284.9
Sample C Female 342.3
Sample D Female 314.5
Hippocampal formation
nTPM: 395.1
Samples: 4

Max nTPM: 450.9
Min nTPM: 369.5
Sample A Male 450.9
Sample B Male 372.6
Sample C Female 387.4
Sample D Female 369.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.2
81600140 Antisense, RP_080312_03_A05, Mouse strain C57BL/6J (56 days, male) 17.7
69627021 Antisense, RP_050428_01_G02, Mouse strain C57BL/6J (56 days, male) 16.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo