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  • RPL6
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:922.2 nTPM
HPA Brain:363.3 nTPM
GTEx:922.2 nTPM
FANTOM5:34.4 Scaled Tags Per Million
Pig:722.3 nTPM
Mouse:448.5 nTPM
Allen mouse:20.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

363.3
Sample id Sample description nTPM
Amygdala
nTPM: 363.3
2695 Female, age 67, right hemisphere 433.5
2517 Female, age 94, left hemisphere 383.9
2514 Male, age 75, right hemisphere 361.4
1987 Female, age 91, left hemisphere 335.6
2814 Male, age 76, right hemisphere 302.2
Basal amygdala
nTPM: 311.5
2827 Female, age 67, right hemisphere 375.1
2609 Male, age 75, right hemisphere 354.5
2685 Female, age 94, left hemisphere 311.8
2110 Male, age 80, left hemisphere 298.9
2243 Female, age 91, right hemisphere 288.9
1955 Male, age 76, both hemispheres 239.6
Central amygdala
nTPM: 336.9
2826 Female, age 94, left hemisphere 453.7
2515 Male, age 75, right hemisphere 391.1
2239 Male, age 80, left hemisphere 297.0
2701 Female, age 91, right hemisphere 289.4
1905 Male, age 76, both hemispheres 253.3
Corticomedial amygdala
nTPM: 320.7
2428 Male, age 75, right hemisphere 391.9
2535 Female, age 67, right hemisphere 346.8
2829 Male, age 80, left hemisphere 321.2
2429 Female, age 94, left hemisphere 306.8
2242 Female, age 91, right hemisphere 288.5
2240 Male, age 76, both hemispheres 269.3
Lateral amygdala
nTPM: 339.9
2830 Female, age 67, right hemisphere 481.1
2516 Male, age 75, right hemisphere 386.7
2534 Female, age 94, left hemisphere 376.1
2256 Male, age 80, left hemisphere 286.7
1883 Male, age 76, both hemispheres 268.3
2255 Female, age 91, right hemisphere 240.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

922.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 922.2
Samples: 181

Max nTPM: 2469.7
Min nTPM: 529.7
Std nTPM: 288.5
Median nTPM: 869.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2469.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1947.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1944.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1939.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1822.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1815.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1798.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1645.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1389.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1361.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1331.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1318.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1312.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1274.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1256.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1245.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1224.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1219.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1213.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1212.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1197.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1192.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1187.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1173.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1171.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1152.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1136.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1135.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1115.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1092.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1088.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1086.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1073.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1068.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1054.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1051.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1047.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1042.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1040.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1038.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1037.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1028.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1026.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1023.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1022.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1017.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1015.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1014.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1011.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1007.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1007.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1002.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1002.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 998.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 996.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 992.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 991.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 988.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 984.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 980.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 976.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 973.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 966.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 959.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 956.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 955.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 953.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 942.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 941.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 939.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 935.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 919.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 917.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 917.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 910.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 906.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 906.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 903.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 901.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 901.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 900.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 896.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 888.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 884.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 881.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 881.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 881.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 880.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 877.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 873.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 869.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 868.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 866.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 865.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 864.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 863.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 860.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 860.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 853.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 853.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 849.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 846.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 845.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 843.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 842.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 842.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 834.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 830.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 816.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 814.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 813.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 808.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 800.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 796.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 796.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 793.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 791.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 791.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 786.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 784.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 778.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 771.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 770.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 764.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 763.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 761.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 755.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 755.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 755.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 748.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 748.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 747.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 745.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 745.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 743.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 732.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 720.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 712.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 711.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 705.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 704.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 703.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 702.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 701.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 700.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 697.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 696.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 696.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 692.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 689.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 686.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 685.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 679.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 677.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 674.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 670.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 670.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 662.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 661.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 660.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 657.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 655.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 655.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 651.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 643.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 643.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 638.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 626.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 621.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 617.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 604.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 599.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 598.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 598.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 592.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 582.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 573.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 571.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 548.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 538.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 529.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 34.4
FF:10151-102I7 76 years, female 34.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

722.3
Pig sample Sample description nTPM
Amygdala
nTPM: 722.3
Samples: 4

Max nTPM: 862.0
Min nTPM: 478.5
Sample A Female 836.1
Sample B Female 862.0
Sample C Male 712.4
Sample D Male 478.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

448.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 448.5
Samples: 4

Max nTPM: 477.0
Min nTPM: 434.1
Sample A Male 444.8
Sample B Male 477.0
Sample C Female 438.2
Sample D Female 434.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.9
69818317 Antisense, RP_050510_04_H04, Mouse strain C57BL/6J (56 days, male) 20.9

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