On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
836.3
nTPM
HPA Brain:
410.7
nTPM
GTEx:
836.3
nTPM
FANTOM5:
24.7
Scaled Tags Per Million
Macaque:
127.8
nTPM
Mouse:
339.0
nTPM
Rat:
188.8
nTPM
Pig:
900.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
410.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 345.1
2586
Male, age 75, left hemisphere
452.8
2666
Male, age 74, left hemisphere
395.7
1870
Female, age 42, unknown
359.2
2411
Female, age 72, unknown
349.5
1827
Male, age 72, unknown
335.1
2219
Male, age 76, both hemispheres
330.9
1833
Male, age 53, unknown
324.5
1830
Male, age 51, unknown
312.6
2828
Female, age 72, unknown
303.4
2019
Male, age 18, unknown
287.6
Dorsal raphe nucleus nTPM: 337.5
2298
Female, age 72, unknown
347.2
2750
Male, age 76, both hemispheres
343.3
2016
Female, age 72, unknown
337.1
1828
Male, age 53, unknown
330.5
2047
Male, age 72, unknown
329.7
Inferior colliculus nTPM: 338.8
1890
Male, age 53, unknown
349.4
2849
Male, age 72, unknown
339.2
1848
Female, age 42, unknown
334.6
2097
Female, age 72, unknown
332.0
Median raphe nucleus nTPM: 342.7
2220
Male, age 76, midline
342.7
Periaquaductal grey, anterior nTPM: 340.6
2502
Female, age 75, unknown
361.6
1947
Male, age 18, unknown
346.8
1795
Male, age 51, unknown
313.3
Periaquaductal grey, dorsal nTPM: 315.8
1840
Male, age 53, unknown
372.3
2464
Female, age 72, unknown
330.4
1831
Male, age 72, unknown
306.6
2850
Male, age 76, both hemispheres
253.8
Periaquaductal grey, lateral nTPM: 269.9
2053
Male, age 18, unknown
321.3
2272
Male, age 74, both hemispheres
255.9
2140
Male, age 76, both hemispheres
232.5
Pretectal area nTPM: 304.3
2825
Male, age 18, unknown
332.2
2407
Male, age 75, both hemispheres
329.0
1816
Male, age 51, unknown
312.4
2224
Female, age 72, unknown
311.2
1817
Female, age 42, unknown
310.1
2007
Male, age 72, unknown
309.2
1815
Male, age 53, unknown
307.7
1944
Female, age 72, unknown
307.4
2316
Male, age 76, right hemisphere
288.9
2667
Female, age 75, unknown
274.2
2273
Male, age 74, both hemispheres
265.4
Red nucleus nTPM: 336.5
2584
Male, age 75, left hemisphere
389.7
2503
Female, age 72, unknown
386.2
1821
Female, age 72, unknown
379.2
1865
Male, age 51, unknown
367.4
2588
Male, age 74, left hemisphere
339.1
1904
Male, age 53, unknown
330.7
2227
Male, age 72, unknown
330.1
2769
Male, age 72, unknown
328.1
2725
Female, age 75, unknown
322.3
2785
Male, age 18, unknown
298.2
1954
Female, age 42, unknown
293.3
2823
Male, age 76, right hemisphere
274.3
Substantia nigra nTPM: 410.7
2241
Male, age 72, unknown
483.3
1851
Male, age 51, unknown
456.6
1916
Female, age 42, unknown
453.1
2665
Male, age 74, both hemispheres
438.5
2699
Male, age 18, unknown
433.3
2409
Female, age 72, unknown
407.3
2590
Female, age 75, unknown
379.6
2583
Male, age 75, right hemisphere
370.8
1941
Male, age 53, unknown
351.0
1889
Female, age 72, unknown
333.5
Superior colliculus nTPM: 326.7
2668
Female, age 75, unknown
378.0
2587
Male, age 74, left hemisphere
361.0
2664
Male, age 75, both hemispheres
352.7
1796
Male, age 53, unknown
333.7
1839
Male, age 51, unknown
326.5
1895
Male, age 76, right hemisphere
325.8
2261
Male, age 18, unknown
305.2
1913
Female, age 42, unknown
304.6
1995
Male, age 72, unknown
297.1
2087
Female, age 72, unknown
282.8
Ventral tegmental area nTPM: 365.6
1915
Female, age 42, unknown
421.7
2223
Female, age 72, unknown
382.1
2021
Male, age 53, unknown
362.0
2410
Female, age 72, unknown
348.0
1942
Male, age 51, unknown
341.3
2218
Male, age 76, both hemispheres
338.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
836.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 836.3
Samples: 183
Max nTPM: 1610.5
Min nTPM: 238.7
Std nTPM: 228.3
Median nTPM: 797.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1610.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1580.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1501.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1395.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1390.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1358.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1347.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1324.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1279.7
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1277.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1274.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1241.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1239.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1216.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1202.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1199.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1192.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1182.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1138.0
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1133.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1130.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1122.3
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1121.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1107.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1095.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1090.5
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1088.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1075.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1068.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1063.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1054.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1054.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1038.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1035.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1030.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1000.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
998.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
990.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
985.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
983.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
975.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
974.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
973.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
972.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
967.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
959.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
958.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
944.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
936.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
935.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
930.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
928.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
928.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
926.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
917.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
910.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
907.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
903.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
900.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
893.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
878.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
878.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
876.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
876.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
875.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
875.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
875.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
873.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
868.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
856.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
852.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
845.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
838.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
835.8
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
828.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
826.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
821.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
817.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
816.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
816.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
814.7
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
813.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
807.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
806.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
804.7
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
804.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
803.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
802.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
802.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
798.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
798.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
797.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
797.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
796.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
790.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
779.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
779.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
778.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
777.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
777.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
774.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
773.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
773.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
770.1
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
769.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
764.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
764.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
762.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
762.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
760.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
745.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
743.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
740.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
738.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
737.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
735.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
734.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
725.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
721.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
720.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
720.8
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
720.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
720.2
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
718.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
718.3
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
712.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
710.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
704.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
701.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
700.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
700.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
699.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
698.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
694.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
688.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
687.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
684.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
681.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
681.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
678.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
675.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
674.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
668.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
662.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
660.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
657.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
655.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
651.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
637.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
635.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
630.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
629.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
621.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
619.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
616.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
613.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
612.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
611.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
610.8
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
609.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
603.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
601.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
598.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
583.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
583.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
582.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
565.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
557.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
553.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
552.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
551.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
550.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
549.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
548.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
538.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
538.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
530.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
520.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
510.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
505.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
494.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
449.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
238.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
127.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 127.2
Samples: 1
Max nTPM: 127.2
Min nTPM: 127.2
Sample A
127.2
Midbrain nTPM: 127.8
Samples: 1
Max nTPM: 127.8
Min nTPM: 127.8
Sample A
127.8
Superior colliculi nTPM: 95.1
Samples: 1
Max nTPM: 95.1
Min nTPM: 95.1
Sample A
95.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
900.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 900.1
Samples: 3
Max nTPM: 1025.1
Min nTPM: 757.1
Sample A
Female
1025.1
Sample B
Female
918.2
Sample C
Male
757.1
Midbrain nTPM: 752.8
Samples: 3
Max nTPM: 891.3
Min nTPM: 671.0
Sample B
Female
891.3
Sample C
Male
696.0
Sample D
Male
671.0
Periaqueductal gray nTPM: 703.7
Samples: 3
Max nTPM: 735.5
Min nTPM: 650.6
Sample B
Female
735.5
Sample C
Male
725.0
Sample D
Male
650.6
Superior colliculi nTPM: 861.2
Samples: 4
Max nTPM: 986.4
Min nTPM: 768.2
Sample A
Female
986.4
Sample B
Female
915.5
Sample C
Male
774.8
Sample D
Male
768.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
339.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 339.0
Samples: 4
Max nTPM: 357.3
Min nTPM: 321.8
Sample A
357.3
Sample B
344.8
Sample C
321.8
Sample D
332.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
188.8
Rat sample
Sample description
nTPM
Midbrain nTPM: 188.8
Samples: 4
Max nTPM: 201.5
Min nTPM: 175.0
Sample A
189.2
Sample A
189.6
Sample A
175.0
Sample A
201.5
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The Human Protein Atlas project is funded
