On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
890.5
nTPM
HPA Brain:
442.2
nTPM
GTEx:
890.5
nTPM
FANTOM5:
27.6
Scaled Tags Per Million
Macaque:
159.1
nTPM
Mouse:
220.6
nTPM
Rat:
191.8
nTPM
Pig:
1014.1
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
54879
Sample
Intensity
Spinal cord_01
96079
Spinal cord_02
85319
Spinal cord_03
61117
Spinal cord_04
87200
Spinal cord_05
40267
Spinal cord_06
38268
Spinal cord_07
42881
Spinal cord_08
48642
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
442.2
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 410.8
2193
Male, age 75, both hemispheres
469.1
2819
Male, age 47, both hemispheres
435.2
2734
Male, age 80, both hemispheres
406.9
2818
Female, age 79, both hemispheres
331.8
Cervical spinal cord, central gray nTPM: 357.6
2565
Male, age 75, midline
442.6
1981
Female, age 72, midline
397.1
2048
Male, age 55, midline
330.9
2194
Female, age 79, both hemispheres
324.1
2816
Male, age 47, midline
293.2
Cervical spinal cord, dorsal horn nTPM: 350.4
2173
Female, age 72, unknown
467.6
2069
Male, age 47, both hemispheres
401.9
2296
Male, age 66, both hemispheres
392.2
1877
Male, age 55, unknown
348.5
2721
Male, age 90, both hemispheres
249.0
2297
Male, age 75, both hemispheres
243.1
Cervical spinal cord, ventral horn nTPM: 442.2
2480
Male, age 75, both hemispheres
597.7
2809
Male, age 90, both hemispheres
523.2
2098
Female, age 72, unknown
463.1
2295
Male, age 66, both hemispheres
416.1
2068
Male, age 55, unknown
381.3
2820
Female, age 79, both hemispheres
271.8
Dorsal funiculus (white matter) nTPM: 389.5
2810
Male, age 90, both hemispheres
440.7
2128
Male, age 75, both hemispheres
428.9
2817
Male, age 47, both hemispheres
370.8
2812
Male, age 66, both hemispheres
359.2
2064
Female, age 79, both hemispheres
347.6
Lateral funiculus (white matter) nTPM: 427.2
2192
Male, age 75, both hemispheres
461.0
2099
Male, age 90, both hemispheres
420.7
2094
Female, age 79, both hemispheres
414.8
2294
Male, age 66, both hemispheres
412.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
890.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 890.5
Samples: 204
Max nTPM: 1847.1
Min nTPM: 435.2
Std nTPM: 251.6
Median nTPM: 869.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
1847.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1591.7
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1540.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1518.9
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1458.4
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1449.6
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1421.9
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1421.0
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1397.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1382.4
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1343.3
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
1331.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1313.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1306.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1283.9
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1270.3
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1268.6
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
1265.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1263.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1228.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1228.9
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1214.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1204.5
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1200.6
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1199.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1184.5
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1177.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1174.7
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1172.3
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1170.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1157.3
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1143.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1140.8
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1134.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1127.4
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1122.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1120.4
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1110.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1106.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1104.1
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1103.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1102.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1097.2
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1095.7
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1093.7
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1087.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1074.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1070.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1067.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1042.0
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1041.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1040.2
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1039.3
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1038.4
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1036.5
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1035.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1030.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
1027.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1019.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1009.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
999.0
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
998.5
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
991.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
991.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
986.3
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
982.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
980.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
972.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
965.2
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
959.3
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
957.5
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
951.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
947.9
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
932.5
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
928.1
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
926.8
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
924.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
923.2
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
922.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
921.4
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
919.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
918.5
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
915.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
915.2
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
912.3
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
910.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
908.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
907.2
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
905.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
898.9
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
892.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
891.9
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
887.9
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
887.5
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
885.8
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
885.1
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
882.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
881.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
879.9
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
878.0
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
874.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
873.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
865.3
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
864.9
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
863.9
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
863.4
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
862.2
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
857.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
852.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
843.9
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
839.7
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
835.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
834.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
832.3
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
828.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
819.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
814.9
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
814.0
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
813.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
808.4
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
806.0
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
800.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
799.0
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
797.6
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
795.0
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
789.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
780.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
780.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
779.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
778.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
777.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
775.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
775.6
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
768.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
760.5
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
759.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
759.0
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
751.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
747.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
727.3
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
722.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
721.3
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
719.4
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
719.1
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
718.6
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
717.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
716.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
716.5
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
713.6
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
711.9
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
707.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
705.5
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
700.6
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
700.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
696.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
693.2
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
688.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
682.8
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
678.8
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
676.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
673.8
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
670.5
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
668.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
667.0
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
657.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
657.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
653.0
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
652.8
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
650.7
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
646.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
644.6
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
636.7
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
634.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
632.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
628.3
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
616.7
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
610.9
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
608.1
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
605.3
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
605.3
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
598.9
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
598.3
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
595.2
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
590.3
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
589.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
585.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
574.1
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
572.6
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
567.5
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
563.7
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
560.9
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
559.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
542.5
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
539.0
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
523.8
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
522.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
521.1
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
513.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
512.8
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
495.0
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
493.2
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
470.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
465.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
435.2
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
159.1
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 131.8
Samples: 2
Max nTPM: 133.5
Min nTPM: 130.1
Sample A
130.1
Sample B
133.5
Ventral spinal cord nTPM: 159.1
Samples: 1
Max nTPM: 159.1
Min nTPM: 159.1
Sample A
159.1
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1014.1
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 1014.1
Samples: 4
Max nTPM: 1344.2
Min nTPM: 747.9
Sample A
Female
747.9
Sample B
Female
1177.2
Sample C
Male
1344.2
Sample D
Male
787.2
Ventral spinal cord nTPM: 926.6
Samples: 4
Max nTPM: 1021.2
Min nTPM: 746.1
Sample A
Female
746.1
Sample B
Female
1021.2
Sample C
Male
967.3
Sample D
Male
971.8
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
220.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 220.6
Samples: 4
Max nTPM: 224.3
Min nTPM: 217.5
Sample A
224.3
Sample B
221.7
Sample C
217.5
Sample D
218.9
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
191.8
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 191.8
Samples: 4
Max nTPM: 213.2
Min nTPM: 176.4
Sample A
186.7
Sample A
190.9
Sample A
176.4
Sample A
213.2
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The Human Protein Atlas project is funded
