On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
167.4
nTPM
HPA Brain:
978.0
nTPM
GTEx:
167.4
nTPM
FANTOM5:
1152.9
Scaled Tags Per Million
Macaque:
526.2
nTPM
Mouse:
371.3
nTPM
Rat:
432.4
nTPM
Pig:
715.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
978.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 959.4
1870
Female, age 42, unknown
1077.2
2411
Female, age 72, unknown
1056.7
2586
Male, age 75, left hemisphere
1048.9
2828
Female, age 72, unknown
1024.6
1830
Male, age 51, unknown
980.0
1833
Male, age 53, unknown
972.8
1827
Male, age 72, unknown
955.3
2019
Male, age 18, unknown
898.2
2666
Male, age 74, left hemisphere
823.9
2219
Male, age 76, both hemispheres
756.6
Dorsal raphe nucleus nTPM: 861.6
2750
Male, age 76, both hemispheres
1032.9
2047
Male, age 72, unknown
842.4
1828
Male, age 53, unknown
824.7
2298
Female, age 72, unknown
810.8
2016
Female, age 72, unknown
797.3
Inferior colliculus nTPM: 758.3
1848
Female, age 42, unknown
806.7
2097
Female, age 72, unknown
777.9
2849
Male, age 72, unknown
769.1
1890
Male, age 53, unknown
679.6
Median raphe nucleus nTPM: 886.7
2220
Male, age 76, midline
886.7
Periaquaductal grey, anterior nTPM: 959.9
2502
Female, age 75, unknown
1031.9
1947
Male, age 18, unknown
999.6
1795
Male, age 51, unknown
848.1
Periaquaductal grey, dorsal nTPM: 750.1
2850
Male, age 76, both hemispheres
786.9
2464
Female, age 72, unknown
776.8
1840
Male, age 53, unknown
719.6
1831
Male, age 72, unknown
717.2
Periaquaductal grey, lateral nTPM: 874.3
2272
Male, age 74, both hemispheres
902.6
2053
Male, age 18, unknown
887.8
2140
Male, age 76, both hemispheres
832.6
Pretectal area nTPM: 862.3
2273
Male, age 74, both hemispheres
957.0
2316
Male, age 76, right hemisphere
937.5
2407
Male, age 75, both hemispheres
927.1
1815
Male, age 53, unknown
878.6
2825
Male, age 18, unknown
876.7
2667
Female, age 75, unknown
862.8
1817
Female, age 42, unknown
830.2
2007
Male, age 72, unknown
829.7
2224
Female, age 72, unknown
816.9
1816
Male, age 51, unknown
797.8
1944
Female, age 72, unknown
770.9
Red nucleus nTPM: 978.0
1865
Male, age 51, unknown
1087.2
1821
Female, age 72, unknown
1063.3
2503
Female, age 72, unknown
1046.0
1904
Male, age 53, unknown
1034.5
2725
Female, age 75, unknown
1028.6
2227
Male, age 72, unknown
1012.5
2769
Male, age 72, unknown
1009.6
1954
Female, age 42, unknown
968.5
2785
Male, age 18, unknown
958.1
2823
Male, age 76, right hemisphere
882.8
2588
Male, age 74, left hemisphere
864.7
2584
Male, age 75, left hemisphere
779.9
Substantia nigra nTPM: 868.7
1916
Female, age 42, unknown
1082.5
1851
Male, age 51, unknown
1015.6
1941
Male, age 53, unknown
998.4
1889
Female, age 72, unknown
858.5
2241
Male, age 72, unknown
851.2
2590
Female, age 75, unknown
850.0
2699
Male, age 18, unknown
840.3
2409
Female, age 72, unknown
824.9
2583
Male, age 75, right hemisphere
773.9
2665
Male, age 74, both hemispheres
592.1
Superior colliculus nTPM: 913.8
2664
Male, age 75, both hemispheres
1043.0
1913
Female, age 42, unknown
1022.6
2587
Male, age 74, left hemisphere
953.3
2261
Male, age 18, unknown
927.6
1995
Male, age 72, unknown
922.8
1796
Male, age 53, unknown
921.0
1839
Male, age 51, unknown
898.0
1895
Male, age 76, right hemisphere
860.9
2668
Female, age 75, unknown
804.2
2087
Female, age 72, unknown
784.7
Ventral tegmental area nTPM: 926.4
2410
Female, age 72, unknown
1028.5
2223
Female, age 72, unknown
974.1
1915
Female, age 42, unknown
940.5
2218
Male, age 76, both hemispheres
920.4
2021
Male, age 53, unknown
855.8
1942
Male, age 51, unknown
839.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 167.4
Samples: 183
Max nTPM: 341.6
Min nTPM: 69.1
Std nTPM: 42.7
Median nTPM: 162.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
341.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
312.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
280.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
279.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
269.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
262.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
259.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
247.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
246.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
242.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
238.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
233.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
229.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
229.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
229.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
226.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
224.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
223.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
221.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
220.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
220.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
219.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
217.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
217.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
214.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
213.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
213.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
211.4
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
210.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
210.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
209.2
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
205.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
204.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
204.0
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
202.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
202.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
202.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
202.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
202.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
201.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
199.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
196.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
195.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
194.7
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
194.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
193.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
192.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
192.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
189.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
188.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
186.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
185.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
184.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
184.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
184.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
183.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
183.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
183.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
182.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
181.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
180.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
178.5
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
178.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
177.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
177.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
176.1
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
176.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
175.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
174.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
173.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
173.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
172.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
171.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
171.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
171.0
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
170.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
169.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
168.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
168.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
167.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
167.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
165.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
165.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
164.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
164.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
164.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
163.6
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
162.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
162.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
162.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
162.1
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
162.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
158.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
158.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
158.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
157.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
157.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
157.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
157.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
157.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
156.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
156.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
156.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
155.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
155.7
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
154.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
153.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
152.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
152.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
151.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
151.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
151.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
151.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
149.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
148.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
148.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
146.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
145.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
144.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
144.2
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
144.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
143.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
142.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
142.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
141.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
141.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
141.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
140.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
140.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
138.8
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
138.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
137.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
136.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
136.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
136.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
136.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
136.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
136.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
136.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
135.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
135.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
133.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
132.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
132.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
131.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
131.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
130.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
130.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
129.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
128.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
128.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
127.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
127.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
127.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
126.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
126.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
126.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
126.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
124.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
124.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
124.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
124.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
124.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
124.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
124.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
122.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
122.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
119.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
119.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
119.1
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
117.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
115.4
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
114.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
112.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
111.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
110.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
107.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
107.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
105.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
104.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
85.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
82.5
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
69.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
526.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 494.8
Samples: 1
Max nTPM: 494.8
Min nTPM: 494.8
Sample A
494.8
Midbrain nTPM: 430.7
Samples: 1
Max nTPM: 430.7
Min nTPM: 430.7
Sample A
430.7
Superior colliculi nTPM: 526.2
Samples: 1
Max nTPM: 526.2
Min nTPM: 526.2
Sample A
526.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
715.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 715.7
Samples: 3
Max nTPM: 853.0
Min nTPM: 507.1
Sample A
Female
853.0
Sample B
Female
507.1
Sample C
Male
787.0
Midbrain nTPM: 645.8
Samples: 3
Max nTPM: 676.8
Min nTPM: 591.0
Sample B
Female
669.7
Sample C
Male
676.8
Sample D
Male
591.0
Periaqueductal gray nTPM: 591.0
Samples: 3
Max nTPM: 614.3
Min nTPM: 553.3
Sample B
Female
605.5
Sample C
Male
614.3
Sample D
Male
553.3
Superior colliculi nTPM: 638.1
Samples: 4
Max nTPM: 750.1
Min nTPM: 369.2
Sample A
Female
697.8
Sample B
Female
369.2
Sample C
Male
735.1
Sample D
Male
750.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
371.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 371.3
Samples: 4
Max nTPM: 383.4
Min nTPM: 343.0
Sample A
343.0
Sample B
375.8
Sample C
383.4
Sample D
383.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
432.4
Rat sample
Sample description
nTPM
Midbrain nTPM: 432.4
Samples: 4
Max nTPM: 469.7
Min nTPM: 407.6
Sample A
407.6
Sample A
469.7
Sample A
440.7
Sample A
411.5
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The Human Protein Atlas project is funded
