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  • HSP90AB1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:460.5 nTPM
HPA Brain:608.8 nTPM
GTEx:460.5 nTPM
FANTOM5:1427.2 Scaled Tags Per Million
Pig:511.8 nTPM
Mouse:1237.1 nTPM
Allen mouse:31.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

608.8
Sample id Sample description nTPM
Amygdala
nTPM: 608.8
2814 Male, age 76, right hemisphere 663.1
2695 Female, age 67, right hemisphere 630.1
1987 Female, age 91, left hemisphere 619.8
2514 Male, age 75, right hemisphere 586.8
2517 Female, age 94, left hemisphere 544.1
Basal amygdala
nTPM: 508.9
2243 Female, age 91, right hemisphere 561.7
2110 Male, age 80, left hemisphere 554.1
2609 Male, age 75, right hemisphere 524.4
1955 Male, age 76, both hemispheres 511.8
2827 Female, age 67, right hemisphere 451.7
2685 Female, age 94, left hemisphere 449.9
Central amygdala
nTPM: 561.1
2826 Female, age 94, left hemisphere 608.6
1905 Male, age 76, both hemispheres 598.7
2515 Male, age 75, right hemisphere 554.2
2239 Male, age 80, left hemisphere 549.4
2701 Female, age 91, right hemisphere 494.8
Corticomedial amygdala
nTPM: 523.8
2829 Male, age 80, left hemisphere 653.3
2428 Male, age 75, right hemisphere 533.9
2242 Female, age 91, right hemisphere 532.5
2240 Male, age 76, both hemispheres 515.9
2429 Female, age 94, left hemisphere 464.4
2535 Female, age 67, right hemisphere 442.6
Lateral amygdala
nTPM: 520.4
1883 Male, age 76, both hemispheres 626.2
2534 Female, age 94, left hemisphere 559.3
2516 Male, age 75, right hemisphere 557.6
2830 Female, age 67, right hemisphere 522.6
2256 Male, age 80, left hemisphere 446.0
2255 Female, age 91, right hemisphere 410.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

460.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 460.5
Samples: 181

Max nTPM: 1095.3
Min nTPM: 230.6
Std nTPM: 149.7
Median nTPM: 438.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1095.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 991.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 936.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 914.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 899.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 899.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 818.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 750.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 745.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 741.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 721.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 691.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 687.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 680.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 669.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 662.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 634.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 632.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 625.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 621.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 615.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 612.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 611.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 610.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 608.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 604.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 602.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 602.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 599.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 596.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 590.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 590.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 589.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 579.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 568.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 561.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 558.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 550.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 549.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 544.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 538.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 537.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 533.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 530.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 530.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 524.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 522.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 521.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 521.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 521.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 519.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 513.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 513.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 510.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 508.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 506.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 505.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 505.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 503.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 502.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 501.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 499.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 491.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 486.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 485.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 485.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 483.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 483.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 479.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 474.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 472.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 470.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 469.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 464.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 464.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 464.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 461.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 460.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 460.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 459.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 459.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 457.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 455.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 452.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 452.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 450.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 449.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 449.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 441.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 438.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 438.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 437.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 436.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 433.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 432.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 432.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 428.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 428.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 427.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 425.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 422.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 418.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 413.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 409.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 406.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 401.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 399.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 396.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 394.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 392.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 391.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 390.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 388.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 386.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 385.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 385.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 381.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 378.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 377.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 373.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 370.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 370.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 367.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 362.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 358.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 356.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 352.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 352.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 350.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 350.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 350.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 349.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 349.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 347.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 346.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 346.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 342.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 341.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 340.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 340.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 340.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 339.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 338.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 337.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 335.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 334.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 331.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 330.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 329.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 329.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 328.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 328.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 327.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 322.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 321.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 321.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 321.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 320.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 318.9
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 308.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 307.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 305.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 304.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 304.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 300.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 299.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 298.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 297.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 297.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 296.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 294.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 290.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 278.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 274.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 271.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 267.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 265.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 265.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 262.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 240.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 230.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1427.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1427.2
FF:10151-102I7 76 years, female 1427.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

511.8
Pig sample Sample description nTPM
Amygdala
nTPM: 511.9
Samples: 4

Max nTPM: 704.0
Min nTPM: 427.7
Sample A Female 704.0
Sample B Female 428.3
Sample C Male 487.4
Sample D Male 427.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1237.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1237.1
Samples: 4

Max nTPM: 1320.0
Min nTPM: 1155.0
Sample A Male 1320.0
Sample B Male 1228.0
Sample C Female 1155.0
Sample D Female 1245.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

31.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 31.8
69735168 Antisense, RP_050503_02_C01, Mouse strain C57BL/6J (56 days, male) 31.8

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