On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
551.9
nTPM
HPA Brain:
853.8
nTPM
GTEx:
551.9
nTPM
FANTOM5:
1958.7
Scaled Tags Per Million
Macaque:
613.5
nTPM
Mouse:
881.5
nTPM
Pig:
661.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
853.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 623.9
2666
Male, age 74, left hemisphere
748.6
2411
Female, age 72, unknown
747.1
1827
Male, age 72, unknown
738.4
2219
Male, age 76, both hemispheres
664.9
2019
Male, age 18, unknown
595.7
1870
Female, age 42, unknown
594.0
1833
Male, age 53, unknown
580.0
2828
Female, age 72, unknown
567.5
1830
Male, age 51, unknown
514.6
2586
Male, age 75, left hemisphere
488.4
Dorsal raphe nucleus nTPM: 739.0
2298
Female, age 72, unknown
916.8
2047
Male, age 72, unknown
843.5
1828
Male, age 53, unknown
715.6
2750
Male, age 76, both hemispheres
663.5
2016
Female, age 72, unknown
555.8
Inferior colliculus nTPM: 566.4
2097
Female, age 72, unknown
627.1
2849
Male, age 72, unknown
553.8
1848
Female, age 42, unknown
546.7
1890
Male, age 53, unknown
537.8
Median raphe nucleus nTPM: 853.8
2220
Male, age 76, midline
853.8
Periaquaductal grey, anterior nTPM: 707.0
1947
Male, age 18, unknown
808.2
1795
Male, age 51, unknown
676.2
2502
Female, age 75, unknown
636.4
Periaquaductal grey, dorsal nTPM: 596.1
1840
Male, age 53, unknown
654.7
2850
Male, age 76, both hemispheres
624.4
2464
Female, age 72, unknown
560.7
1831
Male, age 72, unknown
544.7
Periaquaductal grey, lateral nTPM: 579.0
2272
Male, age 74, both hemispheres
629.8
2053
Male, age 18, unknown
564.4
2140
Male, age 76, both hemispheres
543.0
Pretectal area nTPM: 681.4
1816
Male, age 51, unknown
877.6
2007
Male, age 72, unknown
769.9
1944
Female, age 72, unknown
769.7
1817
Female, age 42, unknown
749.1
2224
Female, age 72, unknown
725.3
1815
Male, age 53, unknown
691.3
2667
Female, age 75, unknown
688.5
2825
Male, age 18, unknown
614.1
2273
Male, age 74, both hemispheres
582.9
2407
Male, age 75, both hemispheres
552.8
2316
Male, age 76, right hemisphere
474.6
Red nucleus nTPM: 587.9
1821
Female, age 72, unknown
752.7
2725
Female, age 75, unknown
716.3
2588
Male, age 74, left hemisphere
623.7
2503
Female, age 72, unknown
606.9
2584
Male, age 75, left hemisphere
585.8
1954
Female, age 42, unknown
569.4
1904
Male, age 53, unknown
555.7
1865
Male, age 51, unknown
549.4
2785
Male, age 18, unknown
546.9
2227
Male, age 72, unknown
524.3
2769
Male, age 72, unknown
522.1
2823
Male, age 76, right hemisphere
501.8
Substantia nigra nTPM: 848.4
1916
Female, age 42, unknown
1205.9
1851
Male, age 51, unknown
984.1
2241
Male, age 72, unknown
975.9
1941
Male, age 53, unknown
940.9
1889
Female, age 72, unknown
798.2
2409
Female, age 72, unknown
786.0
2699
Male, age 18, unknown
777.4
2665
Male, age 74, both hemispheres
762.3
2590
Female, age 75, unknown
661.2
2583
Male, age 75, right hemisphere
591.8
Superior colliculus nTPM: 581.1
2087
Female, age 72, unknown
670.6
2261
Male, age 18, unknown
663.3
1796
Male, age 53, unknown
662.8
2587
Male, age 74, left hemisphere
644.6
2668
Female, age 75, unknown
635.6
1839
Male, age 51, unknown
566.3
1895
Male, age 76, right hemisphere
542.6
2664
Male, age 75, both hemispheres
513.1
1913
Female, age 42, unknown
484.2
1995
Male, age 72, unknown
427.5
Ventral tegmental area nTPM: 764.2
2410
Female, age 72, unknown
943.2
1915
Female, age 42, unknown
891.3
2218
Male, age 76, both hemispheres
823.5
2223
Female, age 72, unknown
661.5
1942
Male, age 51, unknown
656.1
2021
Male, age 53, unknown
609.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
551.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 551.9
Samples: 183
Max nTPM: 1833.4
Min nTPM: 240.8
Std nTPM: 235.1
Median nTPM: 478.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1833.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1256.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1175.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1152.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1148.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1146.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1102.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1089.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1082.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1072.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1019.3
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1009.9
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
989.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
984.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
974.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
966.6
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
935.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
923.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
897.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
885.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
872.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
871.4
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
865.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
843.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
828.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
827.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
783.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
754.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
743.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
742.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
735.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
734.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
730.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
718.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
710.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
692.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
673.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
666.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
663.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
661.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
660.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
649.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
648.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
645.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
641.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
634.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
632.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
612.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
611.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
608.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
606.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
597.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
596.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
593.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
583.4
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
580.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
574.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
574.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
570.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
570.9
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
568.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
564.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
560.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
558.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
557.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
556.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
555.2
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
553.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
552.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
542.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
538.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
508.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
506.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
502.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
500.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
500.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
498.8
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
497.7
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
497.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
493.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
491.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
489.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
489.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
487.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
484.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
483.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
483.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
483.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
482.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
482.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
482.4
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
478.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
478.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
476.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
476.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
474.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
472.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
472.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
471.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
467.3
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
466.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
463.0
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
462.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
461.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
454.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
451.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
450.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
448.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
447.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
444.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
444.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
443.7
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
441.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
439.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
437.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
437.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
430.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
428.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
426.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
426.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
425.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
419.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
419.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
417.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
410.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
410.7
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
409.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
408.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
404.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
401.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
400.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
399.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
398.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
398.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
396.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
395.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
394.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
394.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
394.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
390.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
387.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
385.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
380.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
380.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
379.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
374.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
373.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
371.7
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
371.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
370.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
370.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
368.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
367.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
365.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
364.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
364.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
363.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
356.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
353.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
352.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
352.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
347.6
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
346.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
344.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
343.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
342.9
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
342.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
342.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
336.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
334.3
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
330.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
330.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
327.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
323.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
319.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
316.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
315.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
303.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
300.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
298.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
294.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
281.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
240.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
613.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 613.5
Samples: 1
Max nTPM: 613.5
Min nTPM: 613.5
Sample A
613.5
Midbrain nTPM: 515.2
Samples: 1
Max nTPM: 515.2
Min nTPM: 515.2
Sample A
515.2
Superior colliculi nTPM: 482.0
Samples: 1
Max nTPM: 482.0
Min nTPM: 482.0
Sample A
482.0
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
661.6
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 661.6
Samples: 3
Max nTPM: 771.9
Min nTPM: 457.6
Sample A
Female
755.3
Sample B
Female
457.6
Sample C
Male
771.9
Midbrain nTPM: 582.8
Samples: 3
Max nTPM: 703.2
Min nTPM: 514.2
Sample B
Female
514.2
Sample C
Male
703.2
Sample D
Male
531.0
Periaqueductal gray nTPM: 478.3
Samples: 3
Max nTPM: 584.0
Min nTPM: 399.2
Sample B
Female
451.7
Sample C
Male
584.0
Sample D
Male
399.2
Superior colliculi nTPM: 541.0
Samples: 4
Max nTPM: 640.0
Min nTPM: 387.0
Sample A
Female
603.5
Sample B
Female
387.0
Sample C
Male
640.0
Sample D
Male
533.5
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
881.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 881.5
Samples: 4
Max nTPM: 902.2
Min nTPM: 827.3
Sample A
827.3
Sample B
902.2
Sample C
897.7
Sample D
898.8
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The Human Protein Atlas project is funded
