On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
460.3
nTPM
HPA Brain:
706.6
nTPM
GTEx:
460.3
nTPM
FANTOM5:
1608.8
Scaled Tags Per Million
Macaque:
626.9
nTPM
Mouse:
635.3
nTPM
Pig:
555.0
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
128598
Sample
Intensity
Spinal cord_01
111335
Spinal cord_02
113656
Spinal cord_03
152493
Spinal cord_04
152020
Spinal cord_05
122065
Spinal cord_06
119635
Spinal cord_07
135132
Spinal cord_08
142357
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
706.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 706.2
2193
Male, age 75, both hemispheres
908.8
2819
Male, age 47, both hemispheres
802.5
2734
Male, age 80, both hemispheres
569.4
2818
Female, age 79, both hemispheres
544.2
Cervical spinal cord, central gray nTPM: 612.4
2194
Female, age 79, both hemispheres
680.7
2565
Male, age 75, midline
676.1
1981
Female, age 72, midline
645.6
2816
Male, age 47, midline
531.5
2048
Male, age 55, midline
527.9
Cervical spinal cord, dorsal horn nTPM: 671.8
2296
Male, age 66, both hemispheres
875.0
2173
Female, age 72, unknown
754.5
2069
Male, age 47, both hemispheres
749.9
2297
Male, age 75, both hemispheres
606.3
1877
Male, age 55, unknown
550.2
2721
Male, age 90, both hemispheres
495.1
Cervical spinal cord, ventral horn nTPM: 678.2
2480
Male, age 75, both hemispheres
881.3
2809
Male, age 90, both hemispheres
799.2
2068
Male, age 55, unknown
640.1
2820
Female, age 79, both hemispheres
605.2
2098
Female, age 72, unknown
592.8
2295
Male, age 66, both hemispheres
550.3
Dorsal funiculus (white matter) nTPM: 661.5
2128
Male, age 75, both hemispheres
865.1
2812
Male, age 66, both hemispheres
691.6
2810
Male, age 90, both hemispheres
687.3
2817
Male, age 47, both hemispheres
561.5
2064
Female, age 79, both hemispheres
502.1
Lateral funiculus (white matter) nTPM: 706.6
2192
Male, age 75, both hemispheres
883.6
2099
Male, age 90, both hemispheres
733.9
2094
Female, age 79, both hemispheres
609.4
2294
Male, age 66, both hemispheres
599.4
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
460.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 460.3
Samples: 204
Max nTPM: 2446.2
Min nTPM: 279.8
Std nTPM: 218.3
Median nTPM: 410.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
2446.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
1357.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1253.0
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1219.3
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1192.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1093.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1089.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
936.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
856.1
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
848.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
829.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
806.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
672.6
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
669.3
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
667.1
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
650.4
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
636.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
629.1
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
611.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
611.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
606.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
599.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
593.4
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
581.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
578.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
552.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
551.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
537.5
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
528.3
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
523.9
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
522.8
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
522.0
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
518.7
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
518.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
511.5
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
506.9
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
503.9
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
500.7
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
498.4
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
495.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
495.4
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
494.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
493.6
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
493.3
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
491.6
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
484.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
482.2
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
481.2
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
480.2
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
473.8
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
471.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
470.8
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
469.8
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
469.7
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
466.0
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
463.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
461.4
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
459.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
458.7
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
458.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
458.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
457.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
457.8
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
455.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
453.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
451.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
450.8
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
450.7
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
450.2
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
449.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
446.7
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
442.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
439.2
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
435.7
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
433.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
431.2
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
430.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
427.7
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
426.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
423.2
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
423.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
423.0
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
422.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
420.7
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
420.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
420.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
420.5
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
420.2
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
420.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
419.9
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
419.2
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
419.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
418.9
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
417.4
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
416.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
416.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
412.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
411.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
411.4
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
411.1
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
410.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
410.6
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
410.5
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
409.9
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
409.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
406.3
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
405.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
405.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
404.4
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
403.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
402.9
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
402.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
402.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
401.6
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
399.4
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
395.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
393.7
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
393.0
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
391.4
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
389.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
388.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
387.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
387.7
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
387.5
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
386.1
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
384.3
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
384.1
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
383.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
380.8
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
380.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
378.6
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
377.5
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
377.2
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
376.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
372.1
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
371.3
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
370.7
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
370.4
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
369.9
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
369.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
368.7
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
368.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
367.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
366.8
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
365.9
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
365.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
364.9
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
364.6
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
364.6
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
363.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
363.6
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
362.3
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
361.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
359.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
358.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
358.3
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
356.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
355.5
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
355.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
353.4
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
352.5
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
351.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
349.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
348.1
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
346.1
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
345.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
345.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
345.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
344.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
344.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
343.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
342.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
342.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
341.0
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
338.6
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
338.5
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
337.2
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
336.7
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
336.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
335.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
335.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
333.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
333.5
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
333.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
333.0
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
330.1
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
329.4
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
327.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
327.0
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
322.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
322.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
321.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
317.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
315.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
313.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
309.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
303.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
302.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
302.7
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
301.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
296.1
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
291.7
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
282.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
279.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
626.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 596.2
Samples: 2
Max nTPM: 621.7
Min nTPM: 570.6
Sample A
621.7
Sample B
570.6
Ventral spinal cord nTPM: 626.9
Samples: 1
Max nTPM: 626.9
Min nTPM: 626.9
Sample A
626.9
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
555.0
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 481.7
Samples: 4
Max nTPM: 495.9
Min nTPM: 440.7
Sample A
Female
495.9
Sample B
Female
440.7
Sample C
Male
495.9
Sample D
Male
494.4
Ventral spinal cord nTPM: 555.0
Samples: 4
Max nTPM: 619.1
Min nTPM: 511.6
Sample A
Female
520.7
Sample B
Female
568.7
Sample C
Male
619.1
Sample D
Male
511.6
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
635.3
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 635.3
Samples: 4
Max nTPM: 694.1
Min nTPM: 596.1
Sample A
604.0
Sample B
694.1
Sample C
596.1
Sample D
647.2
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The Human Protein Atlas project is funded
