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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:426.1 nTPM
HPA Brain:619.7 nTPM
GTEx:426.1 nTPM
FANTOM5:217.5 Scaled Tags Per Million
Pig:263.5 nTPM
Mouse:0.2 nTPM
Allen mouse:15.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

619.7
Sample id Sample description nTPM
Amygdala
nTPM: 590.2
2814 Male, age 76, right hemisphere 763.6
2514 Male, age 75, right hemisphere 669.6
2695 Female, age 67, right hemisphere 555.3
1987 Female, age 91, left hemisphere 514.3
2517 Female, age 94, left hemisphere 448.3
Basal amygdala
nTPM: 463.8
2827 Female, age 67, right hemisphere 589.7
2609 Male, age 75, right hemisphere 538.4
2110 Male, age 80, left hemisphere 530.6
1955 Male, age 76, both hemispheres 425.3
2685 Female, age 94, left hemisphere 424.4
2243 Female, age 91, right hemisphere 274.7
Central amygdala
nTPM: 594.7
2515 Male, age 75, right hemisphere 714.2
2826 Female, age 94, left hemisphere 614.2
1905 Male, age 76, both hemispheres 608.0
2239 Male, age 80, left hemisphere 601.6
2701 Female, age 91, right hemisphere 435.7
Corticomedial amygdala
nTPM: 417.1
2428 Male, age 75, right hemisphere 518.8
2535 Female, age 67, right hemisphere 430.2
2429 Female, age 94, left hemisphere 421.3
2829 Male, age 80, left hemisphere 405.4
2242 Female, age 91, right hemisphere 403.0
2240 Male, age 76, both hemispheres 324.2
Lateral amygdala
nTPM: 619.7
2830 Female, age 67, right hemisphere 824.3
2516 Male, age 75, right hemisphere 785.2
1883 Male, age 76, both hemispheres 621.1
2256 Male, age 80, left hemisphere 615.7
2534 Female, age 94, left hemisphere 486.7
2255 Female, age 91, right hemisphere 384.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

426.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 426.1
Samples: 181

Max nTPM: 948.4
Min nTPM: 126.0
Std nTPM: 159.9
Median nTPM: 410.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 948.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 937.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 851.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 816.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 810.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 799.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 797.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 778.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 733.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 720.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 715.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 708.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 698.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 671.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 659.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 651.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 647.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 643.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 630.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 619.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 616.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 616.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 614.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 607.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 601.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 590.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 590.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 586.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 576.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 574.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 570.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 569.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 567.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 567.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 565.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 562.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 551.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 548.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 544.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 539.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 531.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 525.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 522.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 519.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 515.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 515.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 509.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 507.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 507.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 507.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 506.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 505.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 500.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 498.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 495.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 494.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 486.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 485.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 482.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 481.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 479.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 478.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 465.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 464.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 463.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 456.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 453.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 449.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 448.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 448.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 443.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 441.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 433.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 430.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 427.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 426.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 426.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 425.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 425.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 424.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 423.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 421.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 421.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 418.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 418.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 415.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 415.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 414.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 412.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 411.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 410.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 408.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 406.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 402.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 399.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 391.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 390.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 390.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 389.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 388.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 388.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 386.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 385.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 383.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 380.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 376.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 375.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 374.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 373.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 370.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 368.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 368.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 359.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 352.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 352.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 347.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 347.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 346.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 343.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 342.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 342.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 339.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 338.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 335.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 326.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 323.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 322.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 321.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 320.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 319.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 319.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 317.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 316.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 316.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 314.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 314.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 312.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 310.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 309.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 306.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 303.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 299.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 299.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 298.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 298.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 294.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 291.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 285.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 283.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 280.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 276.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 275.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 271.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 270.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 268.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 264.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 264.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 262.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 260.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 259.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 250.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 246.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 245.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 242.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 237.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 232.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 229.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 228.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 227.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 213.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 208.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 201.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 192.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 190.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 190.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 158.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 157.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 147.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 141.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 134.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 126.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

217.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 217.5
FF:10151-102I7 76 years, female 217.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.5
Pig sample Sample description nTPM
Amygdala
nTPM: 263.5
Samples: 4

Max nTPM: 280.0
Min nTPM: 219.8
Sample A Female 219.8
Sample B Female 275.0
Sample C Male 280.0
Sample D Male 279.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 650.9
Samples: 4

Max nTPM: 741.8
Min nTPM: 589.3
Sample A Male 628.3
Sample B Male 589.3
Sample C Female 741.8
Sample D Female 644.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.7
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 16.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Cortical subplate
Expression energy: 15.7
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 16.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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