On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
979.4
nTPM
HPA Brain:
1162.2
nTPM
GTEx:
979.4
nTPM
FANTOM5:
635.0
Scaled Tags Per Million
Macaque:
561.9
nTPM
Mouse:
0.4
nTPM
Rat:
2443.0
nTPM
Pig:
663.0
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
1636
Sample
Intensity
Spinal cord_01
1298
Spinal cord_02
ND
Spinal cord_03
3357
Spinal cord_04
2901
Spinal cord_05
1417
Spinal cord_06
ND
Spinal cord_07
1747
Spinal cord_08
1524
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1162.2
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 1103.1
2734
Male, age 80, both hemispheres
1233.0
2818
Female, age 79, both hemispheres
1191.7
2819
Male, age 47, both hemispheres
1041.7
2193
Male, age 75, both hemispheres
945.9
Cervical spinal cord, central gray nTPM: 854.7
2048
Male, age 55, midline
1008.0
1981
Female, age 72, midline
883.3
2816
Male, age 47, midline
830.5
2565
Male, age 75, midline
788.8
2194
Female, age 79, both hemispheres
763.1
Cervical spinal cord, dorsal horn nTPM: 950.1
2296
Male, age 66, both hemispheres
1473.9
2173
Female, age 72, unknown
1157.2
2069
Male, age 47, both hemispheres
971.8
1877
Male, age 55, unknown
907.8
2297
Male, age 75, both hemispheres
599.7
2721
Male, age 90, both hemispheres
590.4
Cervical spinal cord, ventral horn nTPM: 996.1
2068
Male, age 55, unknown
1180.3
2480
Male, age 75, both hemispheres
1047.3
2098
Female, age 72, unknown
1012.8
2809
Male, age 90, both hemispheres
984.6
2295
Male, age 66, both hemispheres
942.2
2820
Female, age 79, both hemispheres
809.5
Dorsal funiculus (white matter) nTPM: 1162.2
2810
Male, age 90, both hemispheres
1300.6
2812
Male, age 66, both hemispheres
1180.8
2817
Male, age 47, both hemispheres
1157.8
2064
Female, age 79, both hemispheres
1148.6
2128
Male, age 75, both hemispheres
1023.1
Lateral funiculus (white matter) nTPM: 1026.0
2099
Male, age 90, both hemispheres
1339.2
2094
Female, age 79, both hemispheres
1259.1
2192
Male, age 75, both hemispheres
888.0
2294
Male, age 66, both hemispheres
617.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
979.4
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 979.4
Samples: 204
Max nTPM: 2033.3
Min nTPM: 230.8
Std nTPM: 343.5
Median nTPM: 1004.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
2033.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1895.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
1822.6
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1778.1
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1759.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1751.2
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
1750.3
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1744.6
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1603.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1575.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1567.5
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1506.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1488.1
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1485.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1485.5
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
1449.6
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1424.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1424.3
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1408.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1392.5
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
1368.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1348.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1343.9
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1340.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1316.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1312.4
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1308.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1290.6
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1289.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
1286.8
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1284.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1281.8
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1280.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
1277.2
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1271.6
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
1265.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1262.1
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1255.0
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1254.7
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1248.9
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
1244.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1237.8
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
1230.0
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1227.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1224.8
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
1223.0
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
1221.5
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
1216.4
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
1214.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1212.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
1210.4
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1208.5
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
1207.2
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1202.4
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1192.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1189.7
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1189.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1171.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
1166.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1164.3
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1163.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1159.5
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1154.2
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1151.8
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1145.9
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1145.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1138.6
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1138.1
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1130.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1121.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1120.5
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1119.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
1114.6
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1100.5
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1098.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1088.4
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1084.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1083.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
1083.0
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1081.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
1070.3
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1066.8
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1066.0
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1061.5
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1061.2
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
1060.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1055.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1052.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1048.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1039.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1036.9
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
1035.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
1033.1
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
1031.8
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1031.1
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1029.7
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1025.6
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1023.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1023.6
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
1018.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1017.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1013.8
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
994.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
989.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
988.7
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
987.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
978.4
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
967.6
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
962.1
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
956.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
955.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
955.3
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
939.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
939.7
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
933.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
932.2
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
929.7
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
927.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
926.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
917.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
917.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
915.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
910.5
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
908.2
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
905.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
888.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
884.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
884.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
876.6
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
864.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
863.3
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
859.9
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
853.6
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
845.3
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
843.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
838.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
834.3
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
821.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
814.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
808.8
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
794.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
789.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
776.3
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
765.3
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
761.5
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
760.5
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
757.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
754.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
751.9
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
749.1
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
748.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
741.3
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
740.5
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
737.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
736.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
722.6
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
721.7
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
721.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
720.9
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
715.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
708.2
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
699.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
675.5
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
674.8
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
662.9
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
659.3
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
658.6
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
656.9
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
649.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
646.7
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
637.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
627.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
624.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
607.1
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
606.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
595.6
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
586.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
582.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
580.6
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
573.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
564.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
538.2
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
536.1
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
511.8
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
487.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
484.5
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
482.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
479.8
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
465.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
459.8
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
457.6
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
444.5
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
437.7
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
431.4
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
402.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
362.6
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
341.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
330.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
323.9
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
318.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
300.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
248.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
244.6
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
230.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
561.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 562.0
Samples: 2
Max nTPM: 654.7
Min nTPM: 469.2
Sample A
654.7
Sample B
469.2
Ventral spinal cord nTPM: 516.0
Samples: 1
Max nTPM: 516.0
Min nTPM: 516.0
Sample A
516.0
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
663.0
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 501.5
Samples: 4
Max nTPM: 566.5
Min nTPM: 425.1
Sample A
Female
425.1
Sample B
Female
535.8
Sample C
Male
478.6
Sample D
Male
566.5
Ventral spinal cord nTPM: 663.0
Samples: 4
Max nTPM: 787.7
Min nTPM: 593.1
Sample A
Female
633.9
Sample B
Female
637.3
Sample C
Male
593.1
Sample D
Male
787.7
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.4
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 704.7
Samples: 4
Max nTPM: 755.7
Min nTPM: 679.7
Sample A
755.7
Sample B
697.5
Sample C
686.0
Sample D
679.7
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2443.0
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 0.7
Samples: 4
Max nTPM: 0.8
Min nTPM: 0.6
Sample A
0.8
Sample A
0.6
Sample A
0.6
Sample A
0.6
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The Human Protein Atlas project is funded
