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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SCD
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:335.1 nTPM
HPA Brain:715.9 nTPM
GTEx:335.1 nTPM
Pig:250.9 nTPM
Mouse:0.1 nTPM
Allen mouse:15.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

715.9
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 318.7
2226 Male, age 75, left hemisphere 339.7
1961 Female, age 42, unknown 297.8
Dorsomedial nucleus
nTPM: 449.4
2017 Female, age 42, unknown 580.3
1989 Male, age 62, unknown 415.3
2041 Female, age 72, unknown 352.5
Lateral hypothalamic area
nTPM: 622.7
2271 Male, age 75, both hemispheres 716.5
2228 Male, age 66, unknown 621.3
1791 Male, age 80, right hemisphere 590.6
2412 Male, age 62, unknown 562.3
Mammillary body
nTPM: 590.5
1948 Female, age 72, unknown 716.4
1834 Female, age 42, unknown 690.7
1945 Male, age 80, right hemisphere 619.9
2413 Male, age 66, unknown 473.7
1923 Female, age 72, unknown 451.6
Paraventricular nucleus
nTPM: 715.9
2700 Male, age 62, unknown 715.9
Preoptic area
nTPM: 561.2
2414 Female, age 72, unknown 692.3
1861 Female, age 42, unknown 649.6
1907 Male, age 80, right hemisphere 341.7
Supraoptic nucleus
nTPM: 624.8
2043 Male, age 62, unknown 765.0
1894 Female, age 72, unknown 686.2
2835 Female, age 72, unknown 423.1
Ventromedial nucleus
nTPM: 336.2
1982 Female, age 72, unknown 351.9
1822 Female, age 42, unknown 320.5

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.1
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 335.1
Samples: 257

Max nTPM: 1383.9
Min nTPM: 62.4
Std nTPM: 199.7
Median nTPM: 273.2
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 1383.9
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 1208.7
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 1030.0
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 1013.9
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 889.5
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 867.3
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 845.4
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 794.5
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 751.2
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 745.7
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 738.8
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 733.3
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 723.4
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 723.1
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 704.5
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 656.6
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 655.4
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 653.2
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 647.8
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 645.2
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 642.9
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 638.6
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 623.0
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 617.6
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 602.7
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 601.1
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 600.4
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 598.9
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 598.6
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 578.1
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 576.3
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 568.9
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 568.4
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 568.3
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 565.9
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 562.3
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 557.5
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 544.0
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 541.2
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 535.1
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 530.9
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 525.2
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 524.9
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 520.6
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 518.4
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 509.0
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 494.9
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 491.2
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 489.7
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 488.6
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 480.6
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 466.1
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 457.4
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 453.3
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 453.3
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 451.7
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 443.6
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 436.3
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 435.3
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 435.1
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 431.0
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 409.0
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 404.7
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 404.4
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 403.8
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 403.6
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 403.3
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 402.6
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 401.5
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 401.4
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 399.6
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 389.8
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 389.1
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 388.2
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 382.6
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 381.8
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 381.4
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 379.6
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 379.0
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 378.8
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 378.0
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 373.6
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 371.6
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 367.2
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 366.7
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 363.3
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 357.1
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 355.8
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 354.3
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 354.2
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 353.9
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 349.2
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 348.6
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 347.6
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 347.1
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 346.8
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 344.6
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 341.6
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 339.3
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 338.7
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 336.7
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 335.1
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 333.9
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 328.2
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 325.0
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 321.2
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 317.4
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 316.2
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 315.2
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 311.1
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 310.4
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 309.9
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 308.2
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 306.9
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 306.2
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 304.8
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 300.5
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 300.0
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 298.4
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 297.6
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 292.6
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 292.1
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 291.5
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 286.8
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 285.1
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 280.6
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 277.2
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 274.0
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 273.2
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 271.1
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 271.1
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 269.9
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 269.2
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 267.0
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 266.6
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 264.8
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 263.0
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 260.5
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 260.0
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 259.0
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 256.2
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 252.8
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 252.3
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 249.6
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 248.4
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 247.4
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 247.3
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 244.9
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 244.3
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 244.2
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 244.1
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 244.1
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 243.0
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 242.6
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 242.6
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 241.3
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 241.2
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 236.7
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 235.1
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 232.0
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 230.9
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 229.9
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 229.3
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 225.7
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 225.3
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 225.2
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 225.1
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 223.9
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 221.6
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 220.3
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 219.9
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 219.8
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 218.7
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 218.5
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 216.1
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 215.0
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 211.9
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 211.3
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 211.1
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 210.2
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 209.9
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 209.5
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 208.8
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 208.8
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 207.6
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 207.4
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 206.1
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 205.5
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 205.3
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 203.7
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 202.8
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 202.0
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 201.7
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 200.3
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 199.0
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 198.4
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 192.9
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 191.9
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 191.6
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 188.0
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 187.8
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 187.2
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 187.1
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 186.5
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 183.2
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 182.1
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 177.1
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 174.9
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 173.7
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 173.4
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 172.7
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 172.5
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 172.2
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 171.0
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 170.7
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 170.3
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 169.6
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 169.0
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 168.0
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 166.7
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 165.9
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 164.6
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 163.9
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 163.4
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 160.9
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 160.5
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 160.5
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 159.8
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 156.2
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 155.8
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 152.8
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 147.3
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 147.0
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 147.0
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 146.7
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 145.3
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 143.0
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 142.3
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 141.9
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 138.6
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 131.8
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 129.0
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 128.2
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 127.7
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 126.9
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 120.9
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 115.0
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 102.9
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 101.1
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 97.0
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 95.0
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 89.2
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 80.3
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 72.6
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 65.9
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 62.8
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 62.4
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

250.9
Pig sample Sample description nTPM
Hypothalamus
nTPM: 250.9
Samples: 4

Max nTPM: 303.4
Min nTPM: 183.7
Sample A Female 279.2
Sample B Female 303.4
Sample C Male 237.4
Sample D Male 183.7

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.1
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 1133.3
Samples: 4

Max nTPM: 1250.0
Min nTPM: 1042.8
Sample A Male 1042.8
Sample B Male 1250.0
Sample C Female 1120.9
Sample D Female 1119.6

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.6
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 15.6
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 16.6
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1
Hypothalamus
Expression energy: 15.6
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 16.6
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 14.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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