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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Antibody HPA012107
Glial cells
Medium
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
495.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 438.4
1898
Male, age 80, left hemisphere
521.8
1911
Female, age 85, right hemisphere
500.1
2529
Female, age 94, left hemisphere
487.5
2621
Female, age 67, right hemisphere
401.0
1855
Male, age 76, left hemisphere
376.9
2148
Female, age 91, left hemisphere
343.3
Dentate gyrus nTPM: 453.7
2530
Female, age 94, left hemisphere
613.1
2528
Male, age 74, both hemispheres
555.2
2010
Male, age 76, both hemispheres
529.8
2246
Female, age 85, both hemispheres
443.0
2531
Female, age 67, both hemispheres
342.4
1927
Female, age 91, both hemispheres
238.6
Entorhinal gyrus nTPM: 425.0
2117
Female, age 91, right hemisphere
589.0
2686
Male, age 75, right hemisphere
489.2
2764
Male, age 80, right hemisphere
441.3
1938
Female, age 85, left hemisphere
420.5
2613
Female, age 94, left hemisphere
332.5
1787
Male, age 76, left hemisphere
277.2
Hippocampus, CA1 nTPM: 402.4
2749
Male, age 80, left hemisphere
500.5
1873
Female, age 85, both hemispheres
482.2
2527
Male, age 74, both hemispheres
471.4
2082
Female, age 91, right hemisphere
339.0
2045
Male, age 76, both hemispheres
218.9
Hippocampus, CA2 nTPM: 441.3
1963
Male, age 80, left hemisphere
618.7
2249
Male, age 74, both hemispheres
556.4
2437
Female, age 94, left hemisphere
455.6
1940
Female, age 85, left hemisphere
406.4
2113
Female, age 91, right hemisphere
360.9
1892
Male, age 76, both hemispheres
249.6
Hippocampus, CA3 nTPM: 361.4
1891
Female, age 85, both hemispheres
564.6
2436
Male, age 74, both hemispheres
384.8
1867
Male, age 76, both hemispheres
341.1
2861
Female, age 67, both hemispheres
334.2
2137
Male, age 80, left hemisphere
280.2
2620
Female, age 94, left hemisphere
263.3
Parahippocampal cortex nTPM: 338.9
2692
Male, age 74, both hemispheres
455.2
2532
Female, age 72, left hemisphere
430.8
1933
Female, age 85, both hemispheres
364.1
2018
Male, age 76, both hemispheres
331.4
1990
Female, age 91, right hemisphere
323.8
2693
Female, age 94, both hemispheres
311.5
1850
Male, age 80, both hemispheres
308.6
2250
Female, age 67, right hemisphere
297.9
2622
Female, age 67, right hemisphere
288.2
2245
Female, age 91, both hemispheres
277.2
Perirhinal gyrus nTPM: 215.0
2848
Male, age 76, right hemisphere
249.2
2521
Female, age 94, right hemisphere
240.0
1794
Male, age 80, right hemisphere
210.7
1847
Female, age 91, left hemisphere
208.6
1841
Female, age 85, right hemisphere
166.4
Subiculum nTPM: 495.0
2042
Male, age 76, both hemispheres
736.1
1901
Male, age 80, both hemispheres
509.3
1977
Female, age 85, both hemispheres
506.6
2438
Female, age 94, left hemisphere
435.7
2729
Female, age 91, right hemisphere
415.8
2619
Male, age 74, both hemispheres
366.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
444.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 444.3
Samples: 255
Max nTPM: 1559.9
Min nTPM: 60.4
Std nTPM: 209.4
Median nTPM: 410.7
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
1559.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1372.8
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
1051.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1044.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
1008.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
972.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
952.2
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
872.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
860.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
849.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
827.2
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
824.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
820.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
803.2
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
799.8
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
799.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
795.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
782.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
779.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
776.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
770.1
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
758.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
754.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
753.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
722.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
721.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
711.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
711.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
707.4
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
698.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
695.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
686.5
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
679.6
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
678.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
674.1
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
665.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
660.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
660.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
652.2
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
647.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
641.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
633.9
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
605.1
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
597.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
597.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
592.7
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
590.2
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
587.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
586.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
575.2
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
571.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
569.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
568.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
567.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
563.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
559.3
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
555.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
555.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
544.9
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
543.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
542.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
537.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
535.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
533.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
532.4
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
530.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
529.8
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
529.0
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
526.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
524.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
520.8
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
520.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
520.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
518.3
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
512.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
507.5
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
507.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
504.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
503.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
501.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
499.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
498.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
494.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
492.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
489.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
489.9
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
488.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
485.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
484.5
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
481.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
479.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
479.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
478.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
477.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
474.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
473.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
473.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
473.4
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
472.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
465.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
462.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
457.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
456.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
456.0
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
450.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
445.6
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
444.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
443.3
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
441.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
441.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
439.1
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
438.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
434.2
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
431.5
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
429.0
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
429.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
425.7
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
423.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
421.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
421.0
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
419.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
417.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
417.1
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
413.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
412.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
411.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
411.1
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
410.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
410.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
410.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
409.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
405.9
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
403.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
402.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
399.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
399.8
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
399.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
396.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
394.5
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
391.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
387.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
386.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
385.2
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
384.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
383.0
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
382.3
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
380.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
379.6
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
376.9
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
374.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
373.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
371.9
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
367.8
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
362.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
362.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
361.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
360.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
360.1
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
360.0
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
357.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
356.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
355.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
353.9
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
353.9
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
352.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
346.7
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
346.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
345.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
344.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
342.3
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
342.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
341.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
340.1
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
335.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
332.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
329.5
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
328.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
328.0
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
323.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
322.6
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
322.3
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
321.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
319.1
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
316.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
316.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
316.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
315.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
311.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
311.1
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
310.1
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
309.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
305.0
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
304.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
303.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
300.0
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
292.4
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
292.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
286.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
285.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
284.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
281.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
281.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
279.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
278.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
275.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
274.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
269.2
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
267.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
262.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
262.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
260.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
258.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
254.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
251.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
249.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
247.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
246.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
246.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
245.2
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
238.8
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
236.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
235.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
235.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
235.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
234.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
234.3
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
230.8
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
221.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
220.4
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
214.0
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
208.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
207.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
207.3
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
205.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
202.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
193.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
186.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
180.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
178.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
176.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
175.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
174.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
172.6
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
172.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
172.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
171.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
166.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
162.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
159.2
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
148.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
144.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
135.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
111.7
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
95.6
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
60.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
210.4
Pig sample
Sample description
nTPM
Subiculum nTPM: 210.4
Samples: 4
Max nTPM: 230.4
Min nTPM: 190.7
Sample A
Female
193.2
Sample B
Female
227.4
Sample C
Male
230.4
Sample D
Male
190.7
Dorsal hippocampus nTPM: 179.8
Samples: 4
Max nTPM: 203.8
Min nTPM: 144.0
Sample A
Female
200.0
Sample B
Female
171.4
Sample C
Male
203.8
Sample D
Male
144.0
Entorhinal cortex nTPM: 171.7
Samples: 4
Max nTPM: 211.0
Min nTPM: 138.1
Sample A
Female
138.1
Sample B
Female
211.0
Sample C
Male
183.8
Sample D
Male
154.0
Ventral hippocampus nTPM: 203.2
Samples: 4
Max nTPM: 273.9
Min nTPM: 165.5
Sample A
Female
165.5
Sample B
Female
189.0
Sample C
Male
273.9
Sample D
Male
184.5
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 608.6
Samples: 4
Max nTPM: 671.5
Min nTPM: 549.8
Sample A
Male
671.5
Sample B
Male
549.8
Sample C
Female
598.2
Sample D
Female
614.8
Hippocampal formation nTPM: 637.7
Samples: 4
Max nTPM: 704.8
Min nTPM: 612.4
Sample A
Male
618.0
Sample B
Male
612.4
Sample C
Female
704.8
Sample D
Female
615.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.