We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SCD
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SCD
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
Brain methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:444.3 nTPM
HPA Brain:495.0 nTPM
GTEx:444.3 nTPM
FANTOM5:374.5 Scaled Tags Per Million
Pig:210.4 nTPM
Mouse:0.2 nTPM
Allen mouse:12.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA012107
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

495.0
Sample id Sample description nTPM
Hippocampus
nTPM: 438.4
1898 Male, age 80, left hemisphere 521.8
1911 Female, age 85, right hemisphere 500.1
2529 Female, age 94, left hemisphere 487.5
2621 Female, age 67, right hemisphere 401.0
1855 Male, age 76, left hemisphere 376.9
2148 Female, age 91, left hemisphere 343.3
Dentate gyrus
nTPM: 453.7
2530 Female, age 94, left hemisphere 613.1
2528 Male, age 74, both hemispheres 555.2
2010 Male, age 76, both hemispheres 529.8
2246 Female, age 85, both hemispheres 443.0
2531 Female, age 67, both hemispheres 342.4
1927 Female, age 91, both hemispheres 238.6
Entorhinal gyrus
nTPM: 425.0
2117 Female, age 91, right hemisphere 589.0
2686 Male, age 75, right hemisphere 489.2
2764 Male, age 80, right hemisphere 441.3
1938 Female, age 85, left hemisphere 420.5
2613 Female, age 94, left hemisphere 332.5
1787 Male, age 76, left hemisphere 277.2
Hippocampus, CA1
nTPM: 402.4
2749 Male, age 80, left hemisphere 500.5
1873 Female, age 85, both hemispheres 482.2
2527 Male, age 74, both hemispheres 471.4
2082 Female, age 91, right hemisphere 339.0
2045 Male, age 76, both hemispheres 218.9
Hippocampus, CA2
nTPM: 441.3
1963 Male, age 80, left hemisphere 618.7
2249 Male, age 74, both hemispheres 556.4
2437 Female, age 94, left hemisphere 455.6
1940 Female, age 85, left hemisphere 406.4
2113 Female, age 91, right hemisphere 360.9
1892 Male, age 76, both hemispheres 249.6
Hippocampus, CA3
nTPM: 361.4
1891 Female, age 85, both hemispheres 564.6
2436 Male, age 74, both hemispheres 384.8
1867 Male, age 76, both hemispheres 341.1
2861 Female, age 67, both hemispheres 334.2
2137 Male, age 80, left hemisphere 280.2
2620 Female, age 94, left hemisphere 263.3
Parahippocampal cortex
nTPM: 338.9
2692 Male, age 74, both hemispheres 455.2
2532 Female, age 72, left hemisphere 430.8
1933 Female, age 85, both hemispheres 364.1
2018 Male, age 76, both hemispheres 331.4
1990 Female, age 91, right hemisphere 323.8
2693 Female, age 94, both hemispheres 311.5
1850 Male, age 80, both hemispheres 308.6
2250 Female, age 67, right hemisphere 297.9
2622 Female, age 67, right hemisphere 288.2
2245 Female, age 91, both hemispheres 277.2
Perirhinal gyrus
nTPM: 215.0
2848 Male, age 76, right hemisphere 249.2
2521 Female, age 94, right hemisphere 240.0
1794 Male, age 80, right hemisphere 210.7
1847 Female, age 91, left hemisphere 208.6
1841 Female, age 85, right hemisphere 166.4
Subiculum
nTPM: 495.0
2042 Male, age 76, both hemispheres 736.1
1901 Male, age 80, both hemispheres 509.3
1977 Female, age 85, both hemispheres 506.6
2438 Female, age 94, left hemisphere 435.7
2729 Female, age 91, right hemisphere 415.8
2619 Male, age 74, both hemispheres 366.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

444.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 444.3
Samples: 255

Max nTPM: 1559.9
Min nTPM: 60.4
Std nTPM: 209.4
Median nTPM: 410.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 1559.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1372.8
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 1051.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1044.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1008.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 972.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 952.2
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 872.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 860.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 849.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 827.2
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 824.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 820.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 803.2
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 799.8
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 799.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 795.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 782.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 779.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 776.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 770.1
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 758.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 754.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 753.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 722.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 721.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 711.9
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 711.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 707.4
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 698.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 695.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 686.5
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 679.6
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 678.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 674.1
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 665.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 660.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 660.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 652.2
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 647.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 641.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 633.9
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 605.1
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 597.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 597.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 592.7
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 590.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 587.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 586.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 575.2
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 571.4
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 569.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 568.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 567.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 563.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 559.3
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 555.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 555.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 544.9
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 543.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 542.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 537.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 535.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 533.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 532.4
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 530.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 529.8
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 529.0
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 526.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 524.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 520.8
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 520.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 520.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 518.3
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 512.0
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 507.5
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 507.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 504.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 503.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 501.2
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 499.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 498.4
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 494.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 492.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 489.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 489.9
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 488.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 485.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 484.5
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 481.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 479.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 479.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 478.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 477.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 474.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 473.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 473.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 473.4
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 472.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 465.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 462.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 457.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 456.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 456.0
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 450.8
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 445.6
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 444.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 443.3
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 441.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 441.4
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 439.1
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 438.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 434.2
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 431.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 429.0
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 429.0
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 425.7
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 423.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 421.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 421.0
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 419.5
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 417.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 417.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 413.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 412.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 411.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 411.1
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 410.7
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 410.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 410.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 409.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 405.9
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 403.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 402.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 399.8
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 399.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 399.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 396.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 394.5
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 391.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 387.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 386.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 385.2
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 384.0
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 383.0
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 382.3
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 380.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 379.6
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 376.9
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 374.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 373.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 371.9
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 367.8
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 362.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 362.1
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 361.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 360.4
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 360.1
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 360.0
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 357.6
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 356.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 355.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 353.9
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 353.9
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 352.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 346.7
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 346.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 345.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 344.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 342.3
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 342.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 341.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 340.1
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 335.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 332.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 329.5
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 328.2
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 328.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 323.9
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 322.6
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 322.3
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 321.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 319.1
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 316.3
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 316.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 316.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 315.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 311.4
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 311.1
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 310.1
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 309.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 305.0
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 304.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 303.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 300.0
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 292.4
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 292.0
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 286.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 285.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 284.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 281.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 281.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 279.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 278.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 275.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 274.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 269.2
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 267.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 262.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 262.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 260.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 258.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 254.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 251.2
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 249.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 247.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 246.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 246.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 245.2
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 238.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 236.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 235.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 235.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 235.2
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 234.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 234.3
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 230.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 221.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 220.4
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 214.0
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 208.2
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 207.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 207.3
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 205.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 202.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 193.1
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 186.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 180.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 178.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 176.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 175.7
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 174.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 172.6
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 172.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 172.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 171.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 166.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 162.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 159.2
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 148.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 144.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 135.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 111.7
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 95.6
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 60.4
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

374.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 374.5
FF:10169-103B7 60 years, female 441.3
FF:10153-102I9 76 years, female 307.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

210.4
Pig sample Sample description nTPM
Subiculum
nTPM: 210.4
Samples: 4

Max nTPM: 230.4
Min nTPM: 190.7
Sample A Female 193.2
Sample B Female 227.4
Sample C Male 230.4
Sample D Male 190.7
Dorsal hippocampus
nTPM: 179.8
Samples: 4

Max nTPM: 203.8
Min nTPM: 144.0
Sample A Female 200.0
Sample B Female 171.4
Sample C Male 203.8
Sample D Male 144.0
Entorhinal cortex
nTPM: 171.7
Samples: 4

Max nTPM: 211.0
Min nTPM: 138.1
Sample A Female 138.1
Sample B Female 211.0
Sample C Male 183.8
Sample D Male 154.0
Ventral hippocampus
nTPM: 203.2
Samples: 4

Max nTPM: 273.9
Min nTPM: 165.5
Sample A Female 165.5
Sample B Female 189.0
Sample C Male 273.9
Sample D Male 184.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 608.6
Samples: 4

Max nTPM: 671.5
Min nTPM: 549.8
Sample A Male 671.5
Sample B Male 549.8
Sample C Female 598.2
Sample D Female 614.8
Hippocampal formation
nTPM: 637.7
Samples: 4

Max nTPM: 704.8
Min nTPM: 612.4
Sample A Male 618.0
Sample B Male 612.4
Sample C Female 704.8
Sample D Female 615.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 13.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 12.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.2
Hippocampal formation
Expression energy: 12.9
74819250 Antisense, RP_060315_02_D02, Mouse strain C57BL/6J (56 days, male) 13.3
68633119 Antisense, RP_050125_02_D10, Mouse strain C57BL/6J (56 days, male) 12.5
75863344 Antisense, RP_060601_03_C07, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo