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RPL34
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  • RPL34
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1450.2 nTPM
HPA Brain:333.0 nTPM
GTEx:1450.2 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:382.4 nTPM
Mouse:694.9 nTPM
Allen mouse:5.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

333.0
Sample id Sample description nTPM
Amygdala
nTPM: 333.0
2695 Female, age 67, right hemisphere 403.3
2814 Male, age 76, right hemisphere 403.0
2514 Male, age 75, right hemisphere 330.6
1987 Female, age 91, left hemisphere 266.8
2517 Female, age 94, left hemisphere 261.0
Basal amygdala
nTPM: 236.9
2827 Female, age 67, right hemisphere 314.3
1955 Male, age 76, both hemispheres 248.6
2110 Male, age 80, left hemisphere 247.5
2609 Male, age 75, right hemisphere 233.3
2685 Female, age 94, left hemisphere 217.0
2243 Female, age 91, right hemisphere 161.0
Central amygdala
nTPM: 287.8
2826 Female, age 94, left hemisphere 419.4
1905 Male, age 76, both hemispheres 334.0
2515 Male, age 75, right hemisphere 309.7
2239 Male, age 80, left hemisphere 196.4
2701 Female, age 91, right hemisphere 179.4
Corticomedial amygdala
nTPM: 235.4
2428 Male, age 75, right hemisphere 265.0
2240 Male, age 76, both hemispheres 253.3
2829 Male, age 80, left hemisphere 248.6
2429 Female, age 94, left hemisphere 235.6
2535 Female, age 67, right hemisphere 221.0
2242 Female, age 91, right hemisphere 189.1
Lateral amygdala
nTPM: 293.8
2830 Female, age 67, right hemisphere 423.8
2516 Male, age 75, right hemisphere 373.7
2534 Female, age 94, left hemisphere 311.4
1883 Male, age 76, both hemispheres 280.0
2256 Male, age 80, left hemisphere 209.0
2255 Female, age 91, right hemisphere 164.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1450.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1450.2
Samples: 181

Max nTPM: 5036.6
Min nTPM: 669.1
Std nTPM: 640.2
Median nTPM: 1328.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5036.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4728.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 4341.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3867.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 3218.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2854.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2844.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2586.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2580.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2542.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2220.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2204.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2163.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2139.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2120.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2112.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2088.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 2064.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2038.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2001.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1992.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1979.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1976.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1944.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1934.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1907.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1890.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1874.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1865.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1846.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1838.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1799.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1787.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1781.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1758.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1754.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1721.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1710.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1709.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1697.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1673.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1644.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1618.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1615.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1615.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1611.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1602.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1596.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1590.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1587.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1579.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1575.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1575.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1571.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1549.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1544.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1538.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1538.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1532.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1531.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1530.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1517.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1509.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1503.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1500.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1493.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1491.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1471.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1468.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1468.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1458.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1448.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1447.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1441.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1434.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1426.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1425.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1416.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1413.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1388.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1377.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1377.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1370.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1359.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1358.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1343.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1342.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1332.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1332.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1329.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1328.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1326.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1320.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1318.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1300.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1299.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1279.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1275.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1273.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1252.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1251.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1247.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1242.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1240.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1236.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1234.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1230.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1220.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1212.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1210.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1205.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1205.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1202.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1201.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1196.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1190.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1187.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1176.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1172.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1170.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1166.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1152.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1152.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1147.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1136.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1135.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1131.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1131.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1129.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1128.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1093.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1092.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1086.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1059.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1058.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1055.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1048.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1048.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1042.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1040.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1037.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1031.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1022.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1015.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1006.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1005.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1003.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 992.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 988.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 985.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 974.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 959.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 953.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 951.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 936.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 906.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 904.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 902.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 901.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 893.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 889.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 889.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 886.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 883.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 881.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 868.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 853.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 849.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 816.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 806.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 803.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 802.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 801.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 769.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 765.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 763.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 746.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 736.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 706.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 688.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 669.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 27.8
FF:10151-102I7 76 years, female 27.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

382.4
Pig sample Sample description nTPM
Amygdala
nTPM: 382.5
Samples: 4

Max nTPM: 505.0
Min nTPM: 217.1
Sample A Female 432.9
Sample B Female 505.0
Sample C Male 374.8
Sample D Male 217.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

694.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 694.9
Samples: 4

Max nTPM: 718.0
Min nTPM: 644.4
Sample A Male 644.4
Sample B Male 710.2
Sample C Female 718.0
Sample D Female 707.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

5.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.3
68744869 Antisense, RP_050208_01_G10, Mouse strain C57BL/6J (56 days, male) 5.3

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