On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1468.5
nTPM
HPA Brain:
448.9
nTPM
GTEx:
1468.5
nTPM
FANTOM5:
35.5
Scaled Tags Per Million
Macaque:
28.6
nTPM
Mouse:
195.0
nTPM
Rat:
139.5
nTPM
Pig:
665.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
19836
Sample
Intensity
Spinal cord_01
33943
Spinal cord_02
24604
Spinal cord_03
18552
Spinal cord_04
21121
Spinal cord_05
14303
Spinal cord_06
22335
Spinal cord_07
15901
Spinal cord_08
14920
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
448.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 392.5
2193
Male, age 75, both hemispheres
435.9
2734
Male, age 80, both hemispheres
395.0
2819
Male, age 47, both hemispheres
371.4
2818
Female, age 79, both hemispheres
367.7
Cervical spinal cord, central gray nTPM: 315.7
1981
Female, age 72, midline
400.5
2565
Male, age 75, midline
357.7
2048
Male, age 55, midline
347.8
2816
Male, age 47, midline
259.3
2194
Female, age 79, both hemispheres
213.4
Cervical spinal cord, dorsal horn nTPM: 346.8
2173
Female, age 72, unknown
480.7
2069
Male, age 47, both hemispheres
419.7
2296
Male, age 66, both hemispheres
417.5
1877
Male, age 55, unknown
343.3
2297
Male, age 75, both hemispheres
216.5
2721
Male, age 90, both hemispheres
203.1
Cervical spinal cord, ventral horn nTPM: 448.9
2480
Male, age 75, both hemispheres
740.6
2809
Male, age 90, both hemispheres
537.9
2098
Female, age 72, unknown
516.6
2068
Male, age 55, unknown
365.7
2295
Male, age 66, both hemispheres
341.0
2820
Female, age 79, both hemispheres
191.8
Dorsal funiculus (white matter) nTPM: 399.5
2810
Male, age 90, both hemispheres
461.3
2128
Male, age 75, both hemispheres
402.9
2812
Male, age 66, both hemispheres
400.2
2817
Male, age 47, both hemispheres
390.4
2064
Female, age 79, both hemispheres
342.5
Lateral funiculus (white matter) nTPM: 429.2
2099
Male, age 90, both hemispheres
459.1
2192
Male, age 75, both hemispheres
427.8
2094
Female, age 79, both hemispheres
423.6
2294
Male, age 66, both hemispheres
406.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1468.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1468.5
Samples: 204
Max nTPM: 3674.4
Min nTPM: 584.0
Std nTPM: 528.2
Median nTPM: 1378.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
3674.4
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
3199.5
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
2989.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
2687.0
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
2684.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
2638.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
2606.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
2567.5
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
2530.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
2488.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
2451.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
2446.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
2426.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
2369.8
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
2359.4
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
2290.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
2270.8
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
2264.2
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
2222.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
2198.9
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
2197.0
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
2192.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
2164.9
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
2159.4
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
2148.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
2144.0
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
2131.1
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
2085.9
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
2061.1
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
2055.7
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
2039.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
2038.5
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1994.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1978.7
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
1968.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1934.4
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
1933.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1930.4
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
1900.0
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1899.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1885.1
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1876.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1873.8
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
1872.6
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1864.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1857.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
1833.9
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1831.6
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
1811.1
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1795.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
1784.4
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1773.2
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1768.1
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
1763.8
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1701.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1694.1
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
1684.3
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
1666.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1656.6
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1654.2
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
1642.7
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1637.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
1634.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1623.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
1608.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
1589.0
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1583.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1562.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1562.6
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1560.6
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1559.1
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1558.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
1553.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1553.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
1545.8
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1540.8
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1536.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
1533.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1529.4
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
1523.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
1512.3
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1506.1
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
1493.4
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1488.8
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
1485.5
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1481.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1480.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1477.2
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1457.0
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
1451.6
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1449.7
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1442.4
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1439.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1433.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1419.1
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1416.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1413.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
1409.5
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1397.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
1393.9
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1388.4
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1379.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
1377.5
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1374.2
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1365.7
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1365.4
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1354.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
1353.0
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1345.3
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1343.9
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
1335.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
1335.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1334.9
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1329.0
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1321.5
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1314.5
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1298.4
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1290.2
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
1285.0
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1281.0
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
1279.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
1277.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
1272.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1261.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1243.2
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
1236.4
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1234.0
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1229.1
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1224.1
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1222.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1205.2
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
1197.2
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
1189.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1187.1
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1181.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1177.0
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
1167.0
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
1161.1
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1155.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1153.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1147.8
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
1147.7
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1146.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1141.7
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
1139.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1138.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1133.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
1127.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1124.7
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
1102.0
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
1099.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1098.4
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
1089.8
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
1077.8
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
1074.1
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
1071.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
1062.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
1059.8
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
1056.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
1030.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1013.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1010.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
1002.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
983.5
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
979.6
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
964.6
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
958.2
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
957.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
955.5
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
955.3
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
951.8
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
951.1
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
940.0
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
931.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
929.7
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
926.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
912.8
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
912.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
909.9
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
908.3
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
906.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
893.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
887.0
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
880.0
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
879.9
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
875.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
861.4
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
860.8
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
858.3
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
826.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
824.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
814.5
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
811.8
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
786.7
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
781.7
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
777.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
745.9
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
742.9
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
729.0
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
716.2
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
675.9
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
667.2
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
584.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
584.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 15.2
Samples: 2
Max nTPM: 17.6
Min nTPM: 12.7
Sample A
12.7
Sample B
17.6
Ventral spinal cord nTPM: 28.6
Samples: 1
Max nTPM: 28.6
Min nTPM: 28.6
Sample A
28.6
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
665.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 665.6
Samples: 4
Max nTPM: 966.7
Min nTPM: 448.5
Sample A
Female
512.9
Sample B
Female
734.4
Sample C
Male
966.7
Sample D
Male
448.5
Ventral spinal cord nTPM: 565.0
Samples: 4
Max nTPM: 678.4
Min nTPM: 484.1
Sample A
Female
484.1
Sample B
Female
582.7
Sample C
Male
678.4
Sample D
Male
514.7
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
195.0
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 195.0
Samples: 4
Max nTPM: 212.4
Min nTPM: 175.9
Sample A
195.1
Sample B
175.9
Sample C
212.4
Sample D
196.6
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.5
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 139.5
Samples: 4
Max nTPM: 146.9
Min nTPM: 127.9
Sample A
146.9
Sample A
127.9
Sample A
141.5
Sample A
141.6
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The Human Protein Atlas project is funded
