On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1352.2
nTPM
HPA Brain:
291.0
nTPM
GTEx:
1352.2
nTPM
FANTOM5:
29.8
Scaled Tags Per Million
Macaque:
12.0
nTPM
Mouse:
297.6
nTPM
Rat:
136.7
nTPM
Pig:
610.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
291.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 259.5
2411
Female, age 72, unknown
309.6
1827
Male, age 72, unknown
304.4
2666
Male, age 74, left hemisphere
293.8
2828
Female, age 72, unknown
288.5
1870
Female, age 42, unknown
267.1
2019
Male, age 18, unknown
250.3
1833
Male, age 53, unknown
227.4
1830
Male, age 51, unknown
225.9
2586
Male, age 75, left hemisphere
217.4
2219
Male, age 76, both hemispheres
210.6
Dorsal raphe nucleus nTPM: 256.3
2298
Female, age 72, unknown
321.1
2750
Male, age 76, both hemispheres
271.5
2016
Female, age 72, unknown
245.4
1828
Male, age 53, unknown
237.9
2047
Male, age 72, unknown
205.7
Inferior colliculus nTPM: 249.4
2097
Female, age 72, unknown
300.1
1890
Male, age 53, unknown
266.5
1848
Female, age 42, unknown
220.7
2849
Male, age 72, unknown
210.2
Median raphe nucleus nTPM: 244.6
2220
Male, age 76, midline
244.6
Periaquaductal grey, anterior nTPM: 274.8
2502
Female, age 75, unknown
332.4
1947
Male, age 18, unknown
252.3
1795
Male, age 51, unknown
239.8
Periaquaductal grey, dorsal nTPM: 245.9
1840
Male, age 53, unknown
273.4
2464
Female, age 72, unknown
250.8
1831
Male, age 72, unknown
246.3
2850
Male, age 76, both hemispheres
213.1
Periaquaductal grey, lateral nTPM: 217.1
2053
Male, age 18, unknown
265.9
2140
Male, age 76, both hemispheres
198.8
2272
Male, age 74, both hemispheres
186.5
Pretectal area nTPM: 267.7
1816
Male, age 51, unknown
330.9
1944
Female, age 72, unknown
326.7
1815
Male, age 53, unknown
310.4
1817
Female, age 42, unknown
302.5
2007
Male, age 72, unknown
280.2
2316
Male, age 76, right hemisphere
257.9
2224
Female, age 72, unknown
253.4
2407
Male, age 75, both hemispheres
229.0
2825
Male, age 18, unknown
227.0
2667
Female, age 75, unknown
215.5
2273
Male, age 74, both hemispheres
211.5
Red nucleus nTPM: 261.5
2503
Female, age 72, unknown
326.8
2584
Male, age 75, left hemisphere
286.7
1865
Male, age 51, unknown
277.1
1821
Female, age 72, unknown
275.4
2588
Male, age 74, left hemisphere
268.7
2725
Female, age 75, unknown
261.5
1904
Male, age 53, unknown
255.3
2227
Male, age 72, unknown
255.0
2785
Male, age 18, unknown
253.4
2769
Male, age 72, unknown
240.6
2823
Male, age 76, right hemisphere
222.0
1954
Female, age 42, unknown
215.8
Substantia nigra nTPM: 289.7
2409
Female, age 72, unknown
385.6
2241
Male, age 72, unknown
350.5
1851
Male, age 51, unknown
336.8
2665
Male, age 74, both hemispheres
316.9
1889
Female, age 72, unknown
301.3
1916
Female, age 42, unknown
260.7
2590
Female, age 75, unknown
260.1
2699
Male, age 18, unknown
247.3
1941
Male, age 53, unknown
241.2
2583
Male, age 75, right hemisphere
196.0
Superior colliculus nTPM: 291.0
2261
Male, age 18, unknown
353.2
2587
Male, age 74, left hemisphere
331.5
1913
Female, age 42, unknown
314.0
2668
Female, age 75, unknown
313.8
2087
Female, age 72, unknown
300.3
1995
Male, age 72, unknown
295.0
1796
Male, age 53, unknown
292.1
1895
Male, age 76, right hemisphere
261.5
1839
Male, age 51, unknown
236.3
2664
Male, age 75, both hemispheres
212.0
Ventral tegmental area nTPM: 266.7
2410
Female, age 72, unknown
291.3
1915
Female, age 42, unknown
287.0
2223
Female, age 72, unknown
270.3
2021
Male, age 53, unknown
267.4
1942
Male, age 51, unknown
264.1
2218
Male, age 76, both hemispheres
220.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1352.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1352.2
Samples: 183
Max nTPM: 4018.5
Min nTPM: 510.0
Std nTPM: 530.7
Median nTPM: 1233.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
4018.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3218.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2887.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2766.8
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2682.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
2544.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2452.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2400.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
2365.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2347.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2339.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
2274.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2263.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2233.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2192.1
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
2090.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
2086.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2051.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2032.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2014.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1967.4
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1948.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1941.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1922.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1912.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1894.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1865.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1864.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1860.2
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1835.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1816.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1809.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1784.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1776.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1772.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1729.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1709.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1702.1
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1702.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1701.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1694.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1637.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1637.7
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1635.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1608.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1606.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1600.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1589.2
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1589.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1587.0
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1557.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1556.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1555.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1547.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1545.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1541.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1523.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1514.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1512.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1499.4
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1474.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1457.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1437.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1424.5
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1416.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1415.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1412.2
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1393.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1388.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1384.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1368.1
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1365.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1362.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1343.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1337.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1335.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1330.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1327.3
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1324.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1316.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1315.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1315.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1305.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1299.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1297.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1297.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1272.0
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1266.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1265.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1263.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1262.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1233.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1207.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1207.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1195.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1187.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
1183.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1175.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1169.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1166.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1164.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1157.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1154.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1149.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1147.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1146.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1146.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1141.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1123.2
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1120.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1117.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1100.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1085.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1083.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1078.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1075.9
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1075.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1073.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1061.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1059.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1057.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1054.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1050.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1045.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1043.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1040.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1036.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1032.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1024.9
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1018.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1011.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1010.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1006.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1004.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1000.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
996.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
984.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
980.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
977.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
965.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
956.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
947.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
946.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
945.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
941.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
938.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
931.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
913.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
910.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
905.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
890.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
889.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
889.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
889.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
887.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
883.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
878.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
870.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
865.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
856.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
855.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
855.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
842.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
832.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
830.4
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
821.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
817.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
811.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
804.4
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
780.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
761.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
758.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
756.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
755.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
715.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
701.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
677.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
672.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
642.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
596.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
582.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
517.2
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
510.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.0
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 7.9
Samples: 1
Max nTPM: 7.9
Min nTPM: 7.9
Sample A
7.9
Midbrain nTPM: 7.4
Samples: 1
Max nTPM: 7.4
Min nTPM: 7.4
Sample A
7.4
Superior colliculi nTPM: 12.0
Samples: 1
Max nTPM: 12.0
Min nTPM: 12.0
Sample A
12.0
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
610.7
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 610.7
Samples: 3
Max nTPM: 780.0
Min nTPM: 457.4
Sample A
Female
780.0
Sample B
Female
594.8
Sample C
Male
457.4
Midbrain nTPM: 479.0
Samples: 3
Max nTPM: 617.2
Min nTPM: 378.3
Sample B
Female
617.2
Sample C
Male
441.4
Sample D
Male
378.3
Periaqueductal gray nTPM: 438.2
Samples: 3
Max nTPM: 467.3
Min nTPM: 401.8
Sample B
Female
467.3
Sample C
Male
445.5
Sample D
Male
401.8
Superior colliculi nTPM: 557.4
Samples: 4
Max nTPM: 674.0
Min nTPM: 483.6
Sample A
Female
674.0
Sample B
Female
534.7
Sample C
Male
537.2
Sample D
Male
483.6
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
297.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 297.6
Samples: 4
Max nTPM: 329.9
Min nTPM: 270.2
Sample A
329.9
Sample B
305.3
Sample C
270.2
Sample D
285.1
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
136.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 136.7
Samples: 4
Max nTPM: 139.8
Min nTPM: 132.5
Sample A
139.8
Sample A
134.9
Sample A
132.5
Sample A
139.6
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The Human Protein Atlas project is funded
