On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
770.5
nTPM
HPA Brain:
254.4
nTPM
GTEx:
770.5
nTPM
FANTOM5:
125.6
Scaled Tags Per Million
Mouse:
269.7
nTPM
Rat:
1.9
nTPM
Pig:
131.5
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
254.4
Sample id
Sample description
nTPM
Basal amygdala nTPM: 208.3
2827
Female, age 67, right hemisphere
283.4
2609
Male, age 75, right hemisphere
220.7
1955
Male, age 76, both hemispheres
204.1
2685
Female, age 94, left hemisphere
203.7
2110
Male, age 80, left hemisphere
192.1
2243
Female, age 91, right hemisphere
146.1
Central amygdala nTPM: 245.6
2826
Female, age 94, left hemisphere
379.4
2515
Male, age 75, right hemisphere
265.4
1905
Male, age 76, both hemispheres
254.5
2701
Female, age 91, right hemisphere
168.1
2239
Male, age 80, left hemisphere
160.4
Corticomedial amygdala nTPM: 189.7
2428
Male, age 75, right hemisphere
238.0
2535
Female, age 67, right hemisphere
198.2
2240
Male, age 76, both hemispheres
183.7
2829
Male, age 80, left hemisphere
181.9
2429
Female, age 94, left hemisphere
173.8
2242
Female, age 91, right hemisphere
162.9
Lateral amygdala nTPM: 254.4
2830
Female, age 67, right hemisphere
390.5
2516
Male, age 75, right hemisphere
315.0
2534
Female, age 94, left hemisphere
280.7
1883
Male, age 76, both hemispheres
216.2
2256
Male, age 80, left hemisphere
188.8
2255
Female, age 91, right hemisphere
135.2
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
770.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 770.5
Samples: 181
Max nTPM: 2579.3
Min nTPM: 362.6
Std nTPM: 339.8
Median nTPM: 696.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
2579.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
2388.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
2295.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
2055.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
2010.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
1575.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1517.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
1419.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1256.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
1254.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
1253.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
1233.4
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
1181.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
1131.7
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
1125.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
1122.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
1112.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
1102.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
1094.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
1075.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
1058.9
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
1044.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
1032.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
1032.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
1029.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
1027.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1019.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
1003.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
999.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
992.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
988.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
967.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
959.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
958.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
943.9
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
938.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
918.3
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
913.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
913.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
896.6
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
890.9
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
890.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
886.6
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
882.7
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
870.4
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
862.2
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
859.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
858.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
857.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
856.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
841.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
839.4
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
837.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
836.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
820.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
819.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
816.0
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
811.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
805.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
798.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
797.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
796.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
783.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
783.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
779.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
778.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
775.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
771.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
770.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
761.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
761.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
757.9
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
753.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
751.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
747.0
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
746.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
732.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
731.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
723.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
719.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
718.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
714.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
713.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
710.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
707.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
707.8
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
706.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
701.8
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
697.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
697.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
696.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
695.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
689.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
688.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
688.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
687.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
686.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
684.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
682.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
676.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
676.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
672.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
671.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
669.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
665.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
664.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
655.0
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
647.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
646.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
642.9
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
639.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
635.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
635.4
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
634.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
633.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
628.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
620.8
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
620.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
612.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
609.4
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
601.7
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
600.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
596.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
595.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
593.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
593.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
591.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
591.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
587.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
585.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
577.5
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
574.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
572.4
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
572.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
566.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
565.4
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
565.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
564.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
553.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
546.9
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
545.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
542.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
541.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
539.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
535.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
531.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
529.0
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
524.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
523.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
519.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
517.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
516.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
515.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
507.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
507.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
500.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
499.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
498.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
495.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
491.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
484.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
484.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
480.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
480.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
470.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
465.5
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
463.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
461.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
455.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
454.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
453.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
435.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
427.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
402.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
397.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
393.2
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
382.7
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
368.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
367.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
364.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
362.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
131.5
Pig sample
Sample description
nTPM
Amygdala nTPM: 131.5
Samples: 4
Max nTPM: 145.7
Min nTPM: 109.7
Sample A
Female
131.5
Sample B
Female
145.7
Sample C
Male
139.0
Sample D
Male
109.7
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
269.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 269.7
Samples: 4
Max nTPM: 284.9
Min nTPM: 254.6
Sample A
284.9
Sample B
254.6
Sample C
271.2
Sample D
268.2
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.9
Rat sample
Sample description
nTPM
Amygdala nTPM: 1.9
Samples: 4
Max nTPM: 2.7
Min nTPM: 1.4
Sample A
1.4
Sample A
1.5
Sample A
2.1
Sample A
2.7
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The Human Protein Atlas project is funded
