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RPS13
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1097.7 nTPM
HPA Brain:440.6 nTPM
GTEx:1097.7 nTPM
FANTOM5:228.9 Scaled Tags Per Million
Pig:286.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

440.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 322.2
1981 Female, age 72, midline 419.1
2565 Male, age 75, midline 366.4
2048 Male, age 55, midline 359.6
2816 Male, age 47, midline 251.5
2194 Female, age 79, both hemispheres 214.6
Cervical spinal cord, dorsal horn
nTPM: 366.9
2173 Female, age 72, unknown 506.5
2069 Male, age 47, both hemispheres 467.1
2296 Male, age 66, both hemispheres 432.4
1877 Male, age 55, unknown 345.6
2721 Male, age 90, both hemispheres 227.2
2297 Male, age 75, both hemispheres 222.8
Cervical spinal cord, ventral horn
nTPM: 440.6
2480 Male, age 75, both hemispheres 672.9
2098 Female, age 72, unknown 581.8
2809 Male, age 90, both hemispheres 545.5
2295 Male, age 66, both hemispheres 361.8
2068 Male, age 55, unknown 308.4
2820 Female, age 79, both hemispheres 173.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1097.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1097.7
Samples: 204

Max nTPM: 2579.9
Min nTPM: 412.0
Std nTPM: 346.0
Median nTPM: 1043.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2579.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1985.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1927.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1908.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1885.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1836.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1750.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1744.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1718.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1718.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1717.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1683.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1673.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1669.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1656.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1652.3
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1637.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1617.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1617.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1607.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1595.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1586.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1573.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1565.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1556.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1533.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1511.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1508.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1498.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1498.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1489.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1488.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1483.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1482.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1478.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1473.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1470.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1456.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1455.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1447.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1422.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1422.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1412.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1394.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1393.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1375.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1340.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1325.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1318.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1313.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1311.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1294.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1293.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1290.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1288.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1283.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1273.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1270.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1268.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1250.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1235.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1234.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1219.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1207.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1199.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1189.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1187.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1173.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1165.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1158.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1154.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1153.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1152.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1151.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1149.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1132.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1125.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1124.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1122.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1120.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1120.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1117.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1116.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1107.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1101.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1099.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1097.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1096.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1094.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1092.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1091.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1091.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1090.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1087.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1072.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1069.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1068.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1067.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1050.1
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1049.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1048.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1044.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1042.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1040.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1040.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1029.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1021.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1019.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1018.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1018.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1017.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1012.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1009.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1007.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1005.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1005.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1004.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 997.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 990.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 976.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 972.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 970.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 967.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 966.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 962.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 960.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 960.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 956.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 953.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 949.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 947.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 944.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 944.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 937.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 934.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 931.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 923.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 912.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 911.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 904.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 904.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 903.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 883.8
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 883.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 870.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 869.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 865.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 861.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 859.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 842.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 841.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 839.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 838.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 833.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 828.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 815.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 803.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 803.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 802.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 797.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 792.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 791.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 788.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 787.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 776.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 773.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 772.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 771.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 771.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 771.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 771.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 765.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 760.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 745.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 739.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 736.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 725.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 720.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 719.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 717.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 711.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 703.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 703.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 702.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 701.9
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 696.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 681.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 673.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 669.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 662.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 650.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 644.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 638.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 631.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 630.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 613.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 613.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 612.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 608.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 564.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 558.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 537.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 483.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 412.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

228.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 228.9
FF:10181-103D1 60 years, female 229.7
FF:10159-103A6 76 years, female 228.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 286.8
Samples: 4

Max nTPM: 445.7
Min nTPM: 158.6
Sample A Female 158.6
Sample B Female 288.4
Sample C Male 445.7
Sample D Male 254.5
Ventral spinal cord
nTPM: 256.1
Samples: 4

Max nTPM: 325.4
Min nTPM: 157.4
Sample A Female 157.4
Sample B Female 258.6
Sample C Male 325.4
Sample D Male 283.1

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