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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
346.1
Sample id
Sample description
nTPM
Amygdala nTPM: 281.3
2814
Male, age 76, right hemisphere
441.3
1987
Female, age 91, left hemisphere
288.1
2517
Female, age 94, left hemisphere
280.0
2514
Male, age 75, right hemisphere
202.5
2695
Female, age 67, right hemisphere
194.8
Basal amygdala nTPM: 328.0
2110
Male, age 80, left hemisphere
411.2
2685
Female, age 94, left hemisphere
405.4
2243
Female, age 91, right hemisphere
396.4
1955
Male, age 76, both hemispheres
329.1
2827
Female, age 67, right hemisphere
216.2
2609
Male, age 75, right hemisphere
209.5
Central amygdala nTPM: 346.1
2826
Female, age 94, left hemisphere
423.4
1905
Male, age 76, both hemispheres
414.8
2239
Male, age 80, left hemisphere
365.7
2701
Female, age 91, right hemisphere
289.0
2515
Male, age 75, right hemisphere
237.7
Corticomedial amygdala nTPM: 314.4
2829
Male, age 80, left hemisphere
425.2
2242
Female, age 91, right hemisphere
366.9
2429
Female, age 94, left hemisphere
355.1
2240
Male, age 76, both hemispheres
304.7
2535
Female, age 67, right hemisphere
236.5
2428
Male, age 75, right hemisphere
198.0
Lateral amygdala nTPM: 322.8
1883
Male, age 76, both hemispheres
462.8
2534
Female, age 94, left hemisphere
462.2
2255
Female, age 91, right hemisphere
304.4
2256
Male, age 80, left hemisphere
296.1
2516
Male, age 75, right hemisphere
219.5
2830
Female, age 67, right hemisphere
191.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
217.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 217.7
Samples: 181
Max nTPM: 620.7
Min nTPM: 80.6
Std nTPM: 94.3
Median nTPM: 206.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
620.7
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
550.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
529.8
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
417.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
413.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
412.7
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
412.0
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
411.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
394.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
387.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
368.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
367.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
361.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
353.5
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
350.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
348.7
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
347.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
346.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
346.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
343.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
339.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
332.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
330.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
321.5
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
321.2
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
315.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
314.6
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
314.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
314.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
311.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
310.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
308.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
306.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
306.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
303.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
301.1
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
298.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
297.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
293.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
291.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
289.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
286.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
285.1
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
282.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
281.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
279.7
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
279.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
278.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
269.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
269.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
263.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
259.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
255.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
254.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
251.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
249.8
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
248.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
246.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
246.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
242.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
237.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
236.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
235.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
230.5
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
229.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
227.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
227.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
227.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
225.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
222.6
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
221.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
219.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
219.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
219.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
215.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
215.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
214.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
213.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
210.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
210.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
209.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
209.2
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
208.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
208.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
208.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
207.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
207.6
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
206.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
206.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
206.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
206.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
205.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
200.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
200.0
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
197.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
196.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
195.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
195.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
194.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
193.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
193.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
192.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
187.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
186.5
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
184.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
182.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
180.0
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
178.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
178.7
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
175.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
172.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
171.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
167.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
164.5
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
163.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
163.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
163.1
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
161.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
161.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
160.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
158.8
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
158.7
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
156.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
156.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
156.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
154.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
154.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
152.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
151.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
151.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
149.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
147.8
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
147.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
146.7
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
146.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
146.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
145.3
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
143.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
140.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
139.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
139.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
138.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
138.3
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
137.8
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
136.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
135.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
134.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
133.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
133.5
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
132.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
130.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
129.9
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
129.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
125.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
123.7
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
122.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
122.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
122.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
121.7
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
121.4
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
120.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
119.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
117.8
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
116.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
115.8
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
114.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
111.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
109.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
109.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
109.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
107.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
100.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
98.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
95.5
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
91.6
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
90.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
89.0
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
86.5
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
82.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
80.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
80.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
371.0
Pig sample
Sample description
nTPM
Amygdala nTPM: 371.0
Samples: 4
Max nTPM: 542.7
Min nTPM: 243.4
Sample A
Female
542.7
Sample B
Female
243.4
Sample C
Male
369.9
Sample D
Male
328.1
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
734.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 734.3
Samples: 4
Max nTPM: 806.8
Min nTPM: 697.3
Sample A
Male
806.8
Sample B
Male
697.3
Sample C
Female
734.2
Sample D
Female
698.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
