On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
188.6
nTPM
HPA Brain:
344.0
nTPM
GTEx:
188.6
nTPM
FANTOM5:
87.8
Scaled Tags Per Million
Macaque:
273.1
nTPM
Mouse:
632.5
nTPM
Rat:
525.3
nTPM
Pig:
491.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
344.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 296.5
2019
Male, age 18, unknown
390.0
1827
Male, age 72, unknown
363.4
2666
Male, age 74, left hemisphere
347.9
2411
Female, age 72, unknown
336.0
2219
Male, age 76, both hemispheres
330.4
2586
Male, age 75, left hemisphere
270.4
2828
Female, age 72, unknown
261.4
1870
Female, age 42, unknown
237.8
1833
Male, age 53, unknown
222.7
1830
Male, age 51, unknown
204.9
Dorsal raphe nucleus nTPM: 298.5
2298
Female, age 72, unknown
409.8
2047
Male, age 72, unknown
326.2
1828
Male, age 53, unknown
317.9
2750
Male, age 76, both hemispheres
268.2
2016
Female, age 72, unknown
170.5
Inferior colliculus nTPM: 287.3
2097
Female, age 72, unknown
353.3
1848
Female, age 42, unknown
287.4
1890
Male, age 53, unknown
280.6
2849
Male, age 72, unknown
227.7
Median raphe nucleus nTPM: 332.5
2220
Male, age 76, midline
332.5
Periaquaductal grey, anterior nTPM: 303.6
1795
Male, age 51, unknown
328.9
1947
Male, age 18, unknown
303.5
2502
Female, age 75, unknown
278.4
Periaquaductal grey, dorsal nTPM: 229.0
1831
Male, age 72, unknown
251.1
1840
Male, age 53, unknown
243.9
2464
Female, age 72, unknown
229.4
2850
Male, age 76, both hemispheres
191.6
Periaquaductal grey, lateral nTPM: 213.1
2272
Male, age 74, both hemispheres
244.0
2053
Male, age 18, unknown
206.7
2140
Male, age 76, both hemispheres
188.5
Pretectal area nTPM: 344.0
1944
Female, age 72, unknown
501.6
1816
Male, age 51, unknown
490.7
2007
Male, age 72, unknown
487.1
1817
Female, age 42, unknown
452.6
1815
Male, age 53, unknown
345.3
2667
Female, age 75, unknown
326.2
2224
Female, age 72, unknown
301.0
2407
Male, age 75, both hemispheres
228.8
2273
Male, age 74, both hemispheres
218.9
2316
Male, age 76, right hemisphere
217.0
2825
Male, age 18, unknown
215.4
Red nucleus nTPM: 238.2
2785
Male, age 18, unknown
341.6
1821
Female, age 72, unknown
283.4
2584
Male, age 75, left hemisphere
274.3
2725
Female, age 75, unknown
250.3
1954
Female, age 42, unknown
241.3
2588
Male, age 74, left hemisphere
236.4
2823
Male, age 76, right hemisphere
226.2
1865
Male, age 51, unknown
204.0
1904
Male, age 53, unknown
203.4
2227
Male, age 72, unknown
201.8
2503
Female, age 72, unknown
200.5
2769
Male, age 72, unknown
194.7
Substantia nigra nTPM: 323.6
1941
Male, age 53, unknown
449.3
1916
Female, age 42, unknown
442.1
1889
Female, age 72, unknown
420.7
1851
Male, age 51, unknown
358.2
2241
Male, age 72, unknown
333.8
2409
Female, age 72, unknown
283.8
2665
Male, age 74, both hemispheres
283.8
2590
Female, age 75, unknown
226.4
2583
Male, age 75, right hemisphere
223.5
2699
Male, age 18, unknown
214.1
Superior colliculus nTPM: 284.0
2087
Female, age 72, unknown
410.6
2668
Female, age 75, unknown
386.0
1796
Male, age 53, unknown
318.1
2261
Male, age 18, unknown
316.6
1895
Male, age 76, right hemisphere
307.2
1839
Male, age 51, unknown
247.9
2664
Male, age 75, both hemispheres
231.3
1913
Female, age 42, unknown
219.8
2587
Male, age 74, left hemisphere
211.7
1995
Male, age 72, unknown
191.0
Ventral tegmental area nTPM: 310.4
2218
Male, age 76, both hemispheres
392.8
2410
Female, age 72, unknown
374.3
1915
Female, age 42, unknown
341.0
1942
Male, age 51, unknown
291.7
2223
Female, age 72, unknown
242.7
2021
Male, age 53, unknown
219.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
188.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 188.6
Samples: 183
Max nTPM: 914.5
Min nTPM: 55.9
Std nTPM: 130.7
Median nTPM: 138.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
914.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
719.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
544.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
516.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
492.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
490.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
472.0
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
467.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
464.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
451.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
444.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
428.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
425.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
423.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
406.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
395.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
392.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
381.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
374.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
358.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
352.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
351.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
347.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
343.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
336.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
333.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
327.9
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
303.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
299.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
296.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
294.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
291.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
291.0
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
290.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
288.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
284.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
266.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
265.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
263.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
256.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
255.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
254.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
248.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
245.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
241.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
235.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
233.0
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
229.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
227.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
219.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
218.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
217.8
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
216.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
216.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
215.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
214.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
210.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
209.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
209.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
203.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
197.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
196.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
195.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
193.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
189.5
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
187.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
187.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
186.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
185.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
181.9
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
181.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
180.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
178.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
177.5
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
177.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
176.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
175.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
171.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
168.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
166.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
164.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
162.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
162.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
155.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
153.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
147.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
147.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
147.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
146.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
145.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
139.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
138.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
138.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
138.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
135.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
135.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
132.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
132.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
129.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
128.5
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
126.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
126.1
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
125.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
124.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
123.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
123.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
119.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
119.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
118.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
117.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
117.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
116.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
116.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
115.6
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
114.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
112.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
111.5
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
110.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
109.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
108.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
108.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
107.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
106.8
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
105.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
105.0
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
104.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
103.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
103.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
103.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
102.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
102.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
102.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
102.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
101.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
100.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
100.4
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
99.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
98.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
98.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
98.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
97.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
97.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
94.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
94.7
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
93.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
93.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
92.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
91.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
90.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
90.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
90.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
89.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
89.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
88.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
86.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
85.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
84.7
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
84.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
81.5
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
81.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
81.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
81.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
80.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
78.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
76.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
75.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
74.4
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
74.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
73.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
73.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
70.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
70.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
67.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
67.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
67.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
66.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
66.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
64.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
62.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
62.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
60.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
59.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
55.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
273.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 142.8
Samples: 1
Max nTPM: 142.8
Min nTPM: 142.8
Sample A
142.8
Midbrain nTPM: 184.3
Samples: 1
Max nTPM: 184.3
Min nTPM: 184.3
Sample A
184.3
Superior colliculi nTPM: 273.1
Samples: 1
Max nTPM: 273.1
Min nTPM: 273.1
Sample A
273.1
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
491.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 350.4
Samples: 3
Max nTPM: 451.3
Min nTPM: 205.5
Sample A
Female
451.3
Sample B
Female
205.5
Sample C
Male
394.3
Midbrain nTPM: 491.8
Samples: 3
Max nTPM: 722.7
Min nTPM: 237.2
Sample B
Female
237.2
Sample C
Male
722.7
Sample D
Male
515.6
Periaqueductal gray nTPM: 267.3
Samples: 3
Max nTPM: 345.4
Min nTPM: 219.1
Sample B
Female
237.3
Sample C
Male
345.4
Sample D
Male
219.1
Superior colliculi nTPM: 490.8
Samples: 4
Max nTPM: 701.5
Min nTPM: 312.9
Sample A
Female
513.2
Sample B
Female
312.9
Sample C
Male
701.5
Sample D
Male
435.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
632.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 632.5
Samples: 4
Max nTPM: 660.9
Min nTPM: 610.2
Sample A
614.0
Sample B
660.9
Sample C
644.8
Sample D
610.2
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
525.3
Rat sample
Sample description
nTPM
Midbrain nTPM: 525.3
Samples: 4
Max nTPM: 562.3
Min nTPM: 492.4
Sample A
492.4
Sample A
562.3
Sample A
552.3
Sample A
494.1
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The Human Protein Atlas project is funded
