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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.
Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)
Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
551.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 290.8
1898
Male, age 80, left hemisphere
449.5
2621
Female, age 67, right hemisphere
315.3
2148
Female, age 91, left hemisphere
268.3
1855
Male, age 76, left hemisphere
260.2
2529
Female, age 94, left hemisphere
227.7
1911
Female, age 85, right hemisphere
224.1
Dentate gyrus nTPM: 344.3
1927
Female, age 91, both hemispheres
426.0
2530
Female, age 94, left hemisphere
360.5
2010
Male, age 76, both hemispheres
339.8
2528
Male, age 74, both hemispheres
328.5
2531
Female, age 67, both hemispheres
308.5
2246
Female, age 85, both hemispheres
302.3
Entorhinal gyrus nTPM: 415.7
2764
Male, age 80, right hemisphere
580.2
2613
Female, age 94, left hemisphere
498.0
1938
Female, age 85, left hemisphere
431.6
1787
Male, age 76, left hemisphere
370.8
2686
Male, age 75, right hemisphere
348.5
2117
Female, age 91, right hemisphere
265.1
Hippocampus, CA1 nTPM: 364.4
2749
Male, age 80, left hemisphere
563.6
2082
Female, age 91, right hemisphere
349.8
1873
Female, age 85, both hemispheres
322.6
2045
Male, age 76, both hemispheres
308.7
2527
Male, age 74, both hemispheres
277.5
Hippocampus, CA2 nTPM: 363.2
1892
Male, age 76, both hemispheres
475.5
1963
Male, age 80, left hemisphere
373.9
2437
Female, age 94, left hemisphere
366.6
1940
Female, age 85, left hemisphere
346.8
2249
Male, age 74, both hemispheres
310.1
2113
Female, age 91, right hemisphere
306.5
Hippocampus, CA3 nTPM: 356.7
2620
Female, age 94, left hemisphere
442.0
2137
Male, age 80, left hemisphere
410.5
1867
Male, age 76, both hemispheres
402.1
2436
Male, age 74, both hemispheres
325.3
1891
Female, age 85, both hemispheres
290.5
2861
Female, age 67, both hemispheres
269.5
Parahippocampal cortex nTPM: 418.8
1850
Male, age 80, both hemispheres
580.4
1990
Female, age 91, right hemisphere
492.6
2245
Female, age 91, both hemispheres
462.6
2693
Female, age 94, both hemispheres
430.2
1933
Female, age 85, both hemispheres
427.8
2532
Female, age 72, left hemisphere
421.2
2250
Female, age 67, right hemisphere
403.6
2018
Male, age 76, both hemispheres
357.2
2622
Female, age 67, right hemisphere
334.7
2692
Male, age 74, both hemispheres
277.2
Perirhinal gyrus nTPM: 551.6
1847
Female, age 91, left hemisphere
698.0
1794
Male, age 80, right hemisphere
655.7
1841
Female, age 85, right hemisphere
538.1
2521
Female, age 94, right hemisphere
460.6
2848
Male, age 76, right hemisphere
405.7
Subiculum nTPM: 308.7
1977
Female, age 85, both hemispheres
431.9
1901
Male, age 80, both hemispheres
357.5
2619
Male, age 74, both hemispheres
304.8
2438
Female, age 94, left hemisphere
295.1
2042
Male, age 76, both hemispheres
235.3
2729
Female, age 91, right hemisphere
227.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
209.8
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 209.8
Samples: 255
Max nTPM: 581.3
Min nTPM: 70.4
Std nTPM: 99.2
Median nTPM: 188.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
581.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
507.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
504.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
498.7
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
489.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
486.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
474.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
455.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
453.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
450.8
GTEX-15EO6-0011-R1b-SM-H7OGP
50-59 years, male
435.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
407.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
398.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
391.1
GTEX-11ZUS-0011-R1a-SM-GI4W7
30-39 years, male
390.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
388.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
388.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
374.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
372.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
369.4
GTEX-1N2EF-0011-R1a-SM-F2TAT
60-69 years, male
366.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
358.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
356.7
GTEX-15SHU-0011-R1b-SM-H6Q7U
40-49 years, female
352.1
GTEX-1LH75-0011-R1a-SM-F341Y
50-59 years, female
350.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
348.4
GTEX-1F52S-0011-R1a-SM-9OSX9
60-69 years, female
347.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
346.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
342.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
338.9
GTEX-11DXY-0011-R1b-SM-GI4VQ
60-69 years, male
337.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
335.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
334.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
332.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
331.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
328.6
GTEX-11H98-0011-R1a-SM-GIN8O
50-59 years, male
322.8
GTEX-1O9I2-0011-R1a-SM-F2TAW
50-59 years, male
320.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
319.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
318.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
317.0
GTEX-1JMQJ-0011-R1b-SM-F2T9P
50-59 years, male
311.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
303.6
GTEX-1JMPZ-0011-R1b-SM-F6497
30-39 years, male
301.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
300.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
299.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
298.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
297.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
296.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
294.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
290.6
GTEX-1P4AB-0011-R1b-SM-F2TAV
50-59 years, male
282.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
279.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
279.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
272.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
271.4
GTEX-1JJ6O-0011-R1b-SM-F2I2M
60-69 years, male
270.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
269.2
GTEX-1MA7X-0011-R1b-SM-F2TAB
60-69 years, male
267.2
GTEX-15DYW-0011-R1a-SM-H6Q6Q
60-69 years, female
265.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
265.5
GTEX-1PPGY-0011-R1b-SM-G8LN3
60-69 years, male
259.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
258.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
256.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
256.6
GTEX-1POEN-0011-R1b-SM-F3K3K
30-39 years, female
252.9
GTEX-117XS-0011-R1b-SM-GJ3PQ
60-69 years, male
252.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
252.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
251.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
251.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
250.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
246.5
GTEX-12126-0011-R1a-SM-GJ3Q8
20-29 years, male
244.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
244.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
243.7
GTEX-1RQEC-0011-R1b-SM-F2I2E
60-69 years, male
242.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
241.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
240.2
GTEX-1I19N-0011-R1b-SM-GOR1A
70-79 years, male
236.3
GTEX-11OF3-0011-R1b-SM-H65ZT
60-69 years, male
235.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
234.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
234.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
233.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
232.5
GTEX-1N2EE-0011-R1a-SM-F3K5K
60-69 years, male
232.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
231.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
229.7
GTEX-1PWST-0011-R1b-SM-F2I38
70-79 years, male
229.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
229.0
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
228.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
227.4
GTEX-11DYG-0011-R1a-SM-GI4X6
60-69 years, male
225.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
224.4
GTEX-1KD4Q-0011-R1a-SM-F3K4Z
40-49 years, male
224.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
223.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
220.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
218.1
GTEX-ZZPT-0011-R1b-SM-GNINL
50-59 years, male
218.1
GTEX-12ZZY-0011-R1a-SM-GIN9E
60-69 years, male
217.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
217.5
GTEX-1LVAO-0011-R1a-SM-F649O
60-69 years, male
214.9
GTEX-ZYY3-0011-R1b-SM-GPI92
60-69 years, female
214.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
213.9
GTEX-1MCQQ-0011-R1a-SM-F341G
60-69 years, male
212.8
GTEX-1PIIG-0011-R1a-SM-F649P
30-39 years, male
212.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
212.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
209.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
209.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
206.1
GTEX-RU72-0011-R1A-SM-HAUZG
50-59 years, female
206.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
205.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
205.5
GTEX-11NV4-0011-R1a-SM-GINAK
60-69 years, male
204.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
204.4
GTEX-1JMOU-0011-R1b-SM-F341B
60-69 years, female
199.7
GTEX-1R9PO-0011-R1b-SM-F2I2G
60-69 years, female
197.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
196.2
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
195.3
GTEX-14JFF-0011-R1b-SM-G8W88
60-69 years, male
195.1
GTEX-12WSA-0011-R1b-SM-GI4VI
60-69 years, male
194.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
194.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
193.7
GTEX-13SLX-0011-R1a-SM-H6Q8N
50-59 years, female
193.5
GTEX-1RDX4-0011-R1a-SM-F3K5H
50-59 years, female
192.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
191.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I
60-69 years, male
190.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
188.9
GTEX-11PRG-0011-R1b-SM-H7OHD
50-59 years, male
188.7
GTEX-1LSVX-0011-R1a-SM-F3K5F
60-69 years, male
187.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
183.3
GTEX-1192X-0011-R1b-SM-GI4VU
50-59 years, male
181.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
181.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ
50-59 years, female
181.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
180.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
179.3
GTEX-1JMLX-0011-R1b-SM-G9ERV
50-59 years, male
178.6
GTEX-13VXU-0011-R1a-SM-GINAT
50-59 years, male
178.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
176.7
GTEX-1R9K4-0011-R1a-SM-F342F
60-69 years, male
176.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
175.7
GTEX-14BMV-0011-R1b-SM-G9ERL
50-59 years, male
175.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
175.2
GTEX-1MJK2-0011-R1b-SM-F649H
50-59 years, male
174.4
GTEX-1JJEA-0011-R1b-SM-F6495
60-69 years, male
174.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
171.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
171.8
GTEX-15RJE-0011-R1b-SM-H6Q7N
40-49 years, male
170.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
170.5
GTEX-14E6C-0011-R1a-SM-G8W86
40-49 years, male
170.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
169.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
169.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
168.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
167.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
166.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
166.2
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
165.6
GTEX-1LVA9-0011-R1b-SM-F2TB5
50-59 years, male
164.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
162.4
GTEX-1QP6S-0011-R1b-SM-F3K59
40-49 years, male
161.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
161.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
161.2
GTEX-1LSNL-0011-R1a-SM-F3K51
50-59 years, male
160.9
GTEX-ZAK1-0011-R1a-SM-GRR1R
50-59 years, female
160.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
160.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
160.3
GTEX-13PVQ-0011-R1b-SM-GJ3RQ
50-59 years, male
160.2
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
158.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
157.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
156.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
156.8
GTEX-1KWVE-0011-R1a-SM-F649B
30-39 years, male
155.9
GTEX-1RQED-0011-R1a-SM-F3K5W
60-69 years, male
155.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
154.5
GTEX-14DAQ-0011-R1a-SM-G8W85
60-69 years, female
153.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
153.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
149.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
149.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
148.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
147.7
GTEX-ZYFD-0011-R1b-SM-GRR1T
50-59 years, male
146.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
144.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
142.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
141.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
138.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
137.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
137.3
GTEX-1JMQK-0011-R1a-SM-F6484
60-69 years, male
137.3
GTEX-ZAJG-0011-R1a-SM-GQ1CV
50-59 years, female
137.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
137.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
136.7
GTEX-1JMQL-0011-R1a-SM-F3K4U
50-59 years, female
136.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
135.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
135.3
GTEX-1RNSC-0011-R1b-SM-F342D
60-69 years, male
132.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
129.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
129.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
127.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
127.5
GTEX-11TTK-0011-R1b-SM-GIN92
60-69 years, female
127.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
127.0
GTEX-1LKK1-0011-R1b-SM-F2TAF
50-59 years, female
126.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
126.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
125.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
122.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
121.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
121.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
121.0
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
120.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
119.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
118.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
114.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
114.4
GTEX-1QMI2-0011-R1b-SM-F3K5Q
60-69 years, male
112.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
111.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
110.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
110.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
110.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
110.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
108.9
GTEX-1NV8Z-0011-R1b-SM-F647K
60-69 years, male
108.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
106.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
105.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
104.9
GTEX-12696-0011-R1a-SM-GHWPW
60-69 years, male
104.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
103.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
102.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
101.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
100.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
99.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
99.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
99.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
98.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
98.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
98.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
97.9
GTEX-1JN6P-0011-R1b-SM-G8LL3
60-69 years, male
97.6
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
97.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF
60-69 years, female
96.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
96.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
93.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
93.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
92.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
91.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
89.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
88.5
GTEX-1N5O9-0011-R1b-SM-F3K4W
60-69 years, male
88.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
87.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
85.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
84.3
GTEX-1KANB-0011-R1a-SM-F3K5M
50-59 years, male
84.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
82.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
79.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
77.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
74.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
70.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
505.5
Pig sample
Sample description
nTPM
Subiculum nTPM: 408.1
Samples: 4
Max nTPM: 528.8
Min nTPM: 325.5
Sample A
Female
528.8
Sample B
Female
370.2
Sample C
Male
407.8
Sample D
Male
325.5
Dorsal hippocampus nTPM: 469.6
Samples: 4
Max nTPM: 551.6
Min nTPM: 382.0
Sample A
Female
551.6
Sample B
Female
508.2
Sample C
Male
436.5
Sample D
Male
382.0
Entorhinal cortex nTPM: 505.5
Samples: 4
Max nTPM: 562.3
Min nTPM: 431.9
Sample A
Female
530.0
Sample B
Female
562.3
Sample C
Male
497.6
Sample D
Male
431.9
Ventral hippocampus nTPM: 457.6
Samples: 4
Max nTPM: 604.4
Min nTPM: 313.5
Sample A
Female
466.1
Sample B
Female
313.5
Sample C
Male
604.4
Sample D
Male
446.4
HIPPOCAMPAL FORMATION - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
729.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 683.9
Samples: 4
Max nTPM: 724.4
Min nTPM: 668.2
Sample A
Male
669.9
Sample B
Male
672.9
Sample C
Female
668.2
Sample D
Female
724.4
Hippocampal formation nTPM: 729.9
Samples: 4
Max nTPM: 786.8
Min nTPM: 699.4
Sample A
Male
699.4
Sample B
Male
705.8
Sample C
Female
786.8
Sample D
Female
727.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.