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  • RPS12
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1858.6 nTPM
HPA Brain:386.1 nTPM
GTEx:1858.6 nTPM
FANTOM5:345.9 Scaled Tags Per Million
Pig:295.9 nTPM
Mouse:797.8 nTPM
Allen mouse:4.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

386.1
Sample id Sample description nTPM
Amygdala
nTPM: 386.1
2695 Female, age 67, right hemisphere 539.6
2814 Male, age 76, right hemisphere 411.6
2514 Male, age 75, right hemisphere 345.7
2517 Female, age 94, left hemisphere 318.6
1987 Female, age 91, left hemisphere 314.7
Basal amygdala
nTPM: 290.4
2827 Female, age 67, right hemisphere 440.1
2609 Male, age 75, right hemisphere 296.8
2110 Male, age 80, left hemisphere 290.2
2685 Female, age 94, left hemisphere 277.0
1955 Male, age 76, both hemispheres 253.8
2243 Female, age 91, right hemisphere 184.2
Central amygdala
nTPM: 350.8
2826 Female, age 94, left hemisphere 572.6
2515 Male, age 75, right hemisphere 363.4
1905 Male, age 76, both hemispheres 353.8
2239 Male, age 80, left hemisphere 249.3
2701 Female, age 91, right hemisphere 214.7
Corticomedial amygdala
nTPM: 257.4
2535 Female, age 67, right hemisphere 304.8
2428 Male, age 75, right hemisphere 304.3
2829 Male, age 80, left hemisphere 273.9
2429 Female, age 94, left hemisphere 237.3
2240 Male, age 76, both hemispheres 229.4
2242 Female, age 91, right hemisphere 194.6
Lateral amygdala
nTPM: 369.2
2830 Female, age 67, right hemisphere 614.0
2516 Male, age 75, right hemisphere 412.0
2534 Female, age 94, left hemisphere 407.5
2256 Male, age 80, left hemisphere 300.9
1883 Male, age 76, both hemispheres 280.7
2255 Female, age 91, right hemisphere 200.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1858.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1858.6
Samples: 181

Max nTPM: 6111.1
Min nTPM: 782.5
Std nTPM: 859.8
Median nTPM: 1643.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6111.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5769.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5686.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4606.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4404.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3873.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3735.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3732.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3667.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 3304.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3203.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3119.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3020.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2953.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2938.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2929.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2914.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2885.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2827.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2824.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2821.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 2696.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 2671.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2615.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2585.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2569.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2550.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 2543.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2528.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2492.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2460.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 2384.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2381.5
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2362.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2361.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2327.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2312.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2296.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2242.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2223.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2198.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 2185.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2144.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2116.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2094.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2087.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 2084.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2076.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2048.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2048.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2044.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 2040.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2036.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2031.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 2018.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2012.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1995.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1983.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1970.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1967.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1965.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1936.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1921.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1903.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1880.3
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1867.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1863.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1860.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1854.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1828.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1820.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1818.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1817.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1799.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1773.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1761.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1757.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1755.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1748.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1746.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1738.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1734.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1715.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1704.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1698.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1686.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1681.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1669.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1658.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1651.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1643.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1619.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1615.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1605.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1592.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1589.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1587.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1583.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1579.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1573.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1571.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1551.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1547.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1547.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1545.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1542.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1541.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1537.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1528.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1520.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1520.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1510.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1507.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1506.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1483.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1471.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1458.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1451.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1427.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1419.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1418.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1415.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1411.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1406.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1391.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1389.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1388.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1373.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1366.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1339.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1334.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1332.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1329.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1326.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1320.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1302.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1302.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1295.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1279.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1261.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1259.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1257.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1250.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1245.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1238.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1236.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1235.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1213.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1206.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1206.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1205.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1204.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1195.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1179.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1171.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1169.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1164.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1143.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1136.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1133.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1119.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1109.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1106.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1103.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1097.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1096.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1089.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1086.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 981.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 961.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 958.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 950.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 925.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 911.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 899.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 897.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 873.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 867.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 819.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 816.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 782.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

345.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 345.9
FF:10151-102I7 76 years, female 345.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.9
Pig sample Sample description nTPM
Amygdala
nTPM: 295.9
Samples: 4

Max nTPM: 375.9
Min nTPM: 183.7
Sample A Female 318.2
Sample B Female 375.9
Sample C Male 305.9
Sample D Male 183.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

797.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 797.8
Samples: 4

Max nTPM: 871.6
Min nTPM: 737.3
Sample A Male 737.3
Sample B Male 823.8
Sample C Female 871.6
Sample D Female 758.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.4
631721 Antisense, RP_040907_01_B12, Mouse strain C57BL/6J (56 days, male) 7.7
70928395 Antisense, RP_050808_02_A04, Mouse strain C57BL/6J (56 days, male) 1.0

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