On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1858.6
nTPM
HPA Brain:
371.1
nTPM
GTEx:
1858.6
nTPM
FANTOM5:
345.9
Scaled Tags Per Million
Macaque:
241.2
nTPM
Mouse:
345.9
nTPM
Rat:
0.6
nTPM
Pig:
296.4
nTPM
AMYGDALA - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - AMYGDALA, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RXFP1+ ...
c-2
Excitatory (VGLUT1/2)
c-3
Inhibitory (GAD1/2) CXCL14+...
c-4
Excitatory (VGLUT1/2)
c-5
Excitatory (VGLUT1/2)
c-6
Inhibitory (GAD1/2) CXCL14+...
c-7
Excitatory (VGLUT1/2)
c-8
Excitatory (VGLUT1/2)
c-9
Excitatory (VGLUT1)
c-10
Excitatory (VGLUT1)
c-11
Inhibitory (GAD1/2)
c-12
Inhibitory (GAD1/2) SST+ LH...
c-13
Excitatory (VGLUT2)
c-14
Inhibitory (GAD1/2) KIT+ LA...
c-15
Inhibitory (GAD1/2) TAC1+ L...
c-16
Excitatory (VGLUT1/2)
c-17
Inhibitory (GAD1/2) TSHZ1+
c-18
Excitatory (VGLUT1/2)
c-19
Inhibitory (GAD1/2) CXCL14+...
c-20
Excitatory (VGLUT1/2)
c-21
Excitatory (VGLUT1/2)
c-22
Excitatory (VGLUT1)
c-23
Unassigned
c-24
Inhibitory (GAD1/2) PENK+ D...
c-25
Excitatory (VGLUT1/2)
c-26
Inhibitory (GAD1/2) CXCL14+...
c-27
Inhibitory (GAD1/2) LHX6+ E...
c-28
Excitatory (VGLUT1/2) SATB2...
c-29
Inhibitory (GAD1) LHX6+
c-30
Excitatory (VGLUT1/2)
c-31
Excitatory (VGLUT1/2)
c-32
Excitatory (VGLUT1)
c-33
Inhibitory (GAD1/2) TAC1+ P...
c-34
Excitatory (VGLUT1/2)
c-35
Excitatory (VGLUT1/2) ETV1+...
c-36
Inhibitory (GAD1/2) PENK+
c-37
Excitatory (VGLUT1/2)
c-38
Excitatory (VGLUT1) FOXP2+
c-39
Excitatory (VGLUT1/2)
c-40
Excitatory (VGLUT1) SOX5+
c-41
Inhibitory (GAD1/2) NOS1+ M...
c-42
Inhibitory (GAD1/2) NOS1+ S...
c-43
Excitatory (VGLUT1/2) ETV1+
c-44
Excitatory (VGLUT1/2) NOS1+
c-45
Excitatory (VGLUT2)
c-46
Excitatory (VGLUT1)
c-47
Serotonergic Inhibitory (GA...
c-48
Excitatory (VGLUT1) FOXP2+ ...
c-49
Excitatory (VGLUT1)
c-50
Inhibitory (GAD1/2) RORB+ K
c-51
CALB2+
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - AMYGDALA, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Astrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocyte progenitor ...
c-7
Microglia
c-8
Oligodendrocytes
c-9
Astrocytes
c-10
Astrocytes (CD44+)
c-11
Microglia
c-12
Oligodendrocyte progenitor ...
c-13
Astrocytes
c-14
Oligodendrocytes
c-15
Astrocytes
c-16
Oligodendrocytes
c-17
Oligodendrocytes
c-18
Fibroblasts
c-19
Ependymal cells
c-20
Mural cells & vECs
c-21
Macrophages
c-22
Immature oligodendrocytes
c-23
Pericytes
c-24
NK-cells & T-cells
c-25
Oligodendrocyte progenitor ...
c-26
Vascular smooth muscle cell
c-27
Fibroblasts (BNC2+ KCNMA1+ ...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
371.1
Sample id
Sample description
nTPM
Basal amygdala nTPM: 291.9
2827
Female, age 67, right hemisphere
445.9
2609
Male, age 75, right hemisphere
296.1
2110
Male, age 80, left hemisphere
291.9
2685
Female, age 94, left hemisphere
277.9
1955
Male, age 76, both hemispheres
255.2
2243
Female, age 91, right hemisphere
184.7
Central amygdala nTPM: 351.7
2826
Female, age 94, left hemisphere
574.4
2515
Male, age 75, right hemisphere
362.5
1905
Male, age 76, both hemispheres
355.8
2239
Male, age 80, left hemisphere
250.6
2701
Female, age 91, right hemisphere
215.4
Corticomedial amygdala nTPM: 258.6
2535
Female, age 67, right hemisphere
308.7
2428
Male, age 75, right hemisphere
303.4
2829
Male, age 80, left hemisphere
275.5
2429
Female, age 94, left hemisphere
237.8
2240
Male, age 76, both hemispheres
230.9
2242
Female, age 91, right hemisphere
195.0
Lateral amygdala nTPM: 371.1
2830
Female, age 67, right hemisphere
621.5
2516
Male, age 75, right hemisphere
411.1
2534
Female, age 94, left hemisphere
408.5
2256
Male, age 80, left hemisphere
302.5
1883
Male, age 76, both hemispheres
282.4
2255
Female, age 91, right hemisphere
200.7
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1858.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 1858.6
Samples: 181
Max nTPM: 6111.1
Min nTPM: 782.5
Std nTPM: 859.8
Median nTPM: 1643.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
6111.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
5769.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
5686.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
4606.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
4404.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
3873.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
3735.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
3732.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
3667.1
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
3304.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
3203.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
3119.5
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
3020.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
2953.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
2938.1
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
2929.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
2914.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
2885.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
2827.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
2824.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
2821.0
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
2696.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
2671.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
2615.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
2585.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
2569.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
2550.7
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
2543.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
2528.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
2492.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
2460.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
2384.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
2381.5
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
2362.7
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
2361.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
2327.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
2312.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
2296.2
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
2242.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
2223.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
2198.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
2185.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
2144.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
2116.2
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
2094.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
2087.2
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
2084.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
2076.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
2048.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
2048.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
2044.8
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
2040.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
2036.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
2031.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
2018.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
2012.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
1995.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
1983.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
1970.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1967.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1965.4
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
1936.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
1921.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
1903.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
1880.3
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
1867.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
1863.9
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
1860.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
1854.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
1828.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
1820.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
1818.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
1817.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
1799.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
1773.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
1761.8
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
1757.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1755.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
1748.8
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
1746.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
1738.6
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
1734.9
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
1715.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
1704.8
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
1698.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
1686.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
1681.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1669.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
1658.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
1651.9
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
1643.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
1619.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
1615.3
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
1605.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1592.5
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
1589.4
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1587.8
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
1583.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
1579.0
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
1573.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
1571.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
1551.9
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
1547.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
1547.1
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
1545.1
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1542.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1541.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
1537.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
1528.7
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
1520.8
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
1520.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1510.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
1507.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1506.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1483.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
1471.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
1458.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1451.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1427.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
1419.0
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
1418.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
1415.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1411.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
1406.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
1391.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
1389.0
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
1388.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
1373.5
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
1366.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
1339.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
1334.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
1332.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
1329.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
1326.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
1320.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
1302.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1302.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
1295.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
1279.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
1261.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
1259.6
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
1257.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
1250.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1245.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
1238.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
1236.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
1235.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
1213.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
1206.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
1206.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
1205.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
1204.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
1195.9
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
1179.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
1171.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
1169.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
1164.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
1143.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1136.5
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
1133.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
1119.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
1109.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
1106.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
1103.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
1097.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
1096.4
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
1089.2
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
1086.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
981.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
961.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
958.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
950.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
925.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
911.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
899.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
897.1
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
873.3
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
867.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
819.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
816.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
782.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
241.2
Macaque sample
Sample description
nTPM
Amygdala nTPM: 241.2
Samples: 2
Max nTPM: 287.9
Min nTPM: 194.5
Sample A
194.5
Sample B
287.9
AMYGDALA - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
296.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 296.4
Samples: 4
Max nTPM: 376.3
Min nTPM: 184.0
Sample A
Female
318.9
Sample B
Female
376.3
Sample C
Male
306.3
Sample D
Male
184.0
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
345.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 345.9
Samples: 4
Max nTPM: 363.8
Min nTPM: 329.6
Sample A
363.8
Sample B
358.3
Sample C
329.6
Sample D
331.8
AMYGDALA - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.6
Rat sample
Sample description
nTPM
Amygdala nTPM: 0.6
Samples: 4
Max nTPM: 1.1
Min nTPM: 0.3
Sample A
0.5
Sample A
1.1
Sample A
0.3
Sample A
0.6
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The Human Protein Atlas project is funded
