On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2127.2
nTPM
HPA Brain:
420.1
nTPM
GTEx:
2127.2
nTPM
FANTOM5:
523.9
Scaled Tags Per Million
Macaque:
299.0
nTPM
Mouse:
314.6
nTPM
Rat:
0.9
nTPM
Pig:
458.2
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
420.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 339.5
2666
Male, age 74, left hemisphere
423.1
2411
Female, age 72, unknown
381.5
1870
Female, age 42, unknown
364.5
2586
Male, age 75, left hemisphere
361.0
2828
Female, age 72, unknown
360.7
1833
Male, age 53, unknown
315.0
1827
Male, age 72, unknown
313.7
1830
Male, age 51, unknown
305.1
2019
Male, age 18, unknown
302.6
2219
Male, age 76, both hemispheres
267.8
Dorsal raphe nucleus nTPM: 320.7
2298
Female, age 72, unknown
352.8
2016
Female, age 72, unknown
350.7
2750
Male, age 76, both hemispheres
328.5
1828
Male, age 53, unknown
309.0
2047
Male, age 72, unknown
262.4
Inferior colliculus nTPM: 288.8
1890
Male, age 53, unknown
343.3
2097
Female, age 72, unknown
285.0
1848
Female, age 42, unknown
270.7
2849
Male, age 72, unknown
256.4
Median raphe nucleus nTPM: 286.5
2220
Male, age 76, midline
286.5
Periaquaductal grey, anterior nTPM: 345.9
2502
Female, age 75, unknown
415.3
1795
Male, age 51, unknown
313.7
1947
Male, age 18, unknown
308.8
Periaquaductal grey, dorsal nTPM: 320.1
1831
Male, age 72, unknown
346.9
1840
Male, age 53, unknown
337.1
2464
Female, age 72, unknown
303.4
2850
Male, age 76, both hemispheres
292.9
Periaquaductal grey, lateral nTPM: 290.1
2053
Male, age 18, unknown
384.3
2140
Male, age 76, both hemispheres
280.9
2272
Male, age 74, both hemispheres
205.0
Pretectal area nTPM: 320.9
1815
Male, age 53, unknown
377.6
1817
Female, age 42, unknown
359.2
2007
Male, age 72, unknown
345.3
2316
Male, age 76, right hemisphere
343.8
1816
Male, age 51, unknown
341.5
2407
Male, age 75, both hemispheres
315.5
2667
Female, age 75, unknown
310.0
1944
Female, age 72, unknown
302.3
2224
Female, age 72, unknown
301.6
2825
Male, age 18, unknown
298.9
2273
Male, age 74, both hemispheres
234.5
Red nucleus nTPM: 403.5
2503
Female, age 72, unknown
560.7
1865
Male, age 51, unknown
444.3
1821
Female, age 72, unknown
443.5
1904
Male, age 53, unknown
422.7
2588
Male, age 74, left hemisphere
413.8
2725
Female, age 75, unknown
407.7
2584
Male, age 75, left hemisphere
391.9
2769
Male, age 72, unknown
391.9
2227
Male, age 72, unknown
366.7
2785
Male, age 18, unknown
347.7
2823
Male, age 76, right hemisphere
336.1
1954
Female, age 42, unknown
314.4
Substantia nigra nTPM: 420.1
1851
Male, age 51, unknown
565.7
2699
Male, age 18, unknown
522.8
2409
Female, age 72, unknown
482.7
2241
Male, age 72, unknown
455.2
1916
Female, age 42, unknown
451.4
2665
Male, age 74, both hemispheres
410.3
2590
Female, age 75, unknown
353.8
1889
Female, age 72, unknown
350.2
2583
Male, age 75, right hemisphere
309.3
1941
Male, age 53, unknown
299.3
Superior colliculus nTPM: 363.1
2587
Male, age 74, left hemisphere
464.9
1995
Male, age 72, unknown
445.0
1913
Female, age 42, unknown
444.0
1796
Male, age 53, unknown
349.1
2668
Female, age 75, unknown
345.9
2087
Female, age 72, unknown
325.3
1839
Male, age 51, unknown
320.7
2664
Male, age 75, both hemispheres
319.6
2261
Male, age 18, unknown
311.2
1895
Male, age 76, right hemisphere
305.5
Ventral tegmental area nTPM: 382.6
1915
Female, age 42, unknown
456.2
2410
Female, age 72, unknown
420.0
2223
Female, age 72, unknown
410.3
2021
Male, age 53, unknown
372.4
2218
Male, age 76, both hemispheres
325.6
1942
Male, age 51, unknown
311.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2127.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2127.2
Samples: 183
Max nTPM: 5523.8
Min nTPM: 620.1
Std nTPM: 817.0
Median nTPM: 2035.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
5523.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5326.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4506.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
4273.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
3980.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
3851.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3833.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3630.7
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
3486.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3484.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
3385.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3323.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3323.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
3313.9
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
3297.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
3214.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3172.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3165.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
3139.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3128.7
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
3127.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
3103.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
3094.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
3070.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
3069.6
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
3026.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
3006.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2996.6
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
2962.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2948.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2948.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
2939.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
2850.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
2823.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
2816.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
2797.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
2758.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
2726.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
2723.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
2717.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2665.6
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
2647.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2615.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
2611.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
2599.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2591.9
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
2582.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
2574.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
2541.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
2532.8
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
2530.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2511.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2506.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2493.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2465.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2446.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2433.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2423.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
2415.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
2407.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2401.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2389.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2386.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2366.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2343.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2313.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2302.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2298.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2291.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
2288.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
2258.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2255.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
2245.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
2236.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2169.8
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
2156.6
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
2151.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
2140.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
2124.6
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
2119.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2116.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
2109.4
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
2108.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2084.4
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
2075.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2073.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2067.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2062.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2055.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
2046.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
2044.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2035.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2032.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
2021.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2005.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1981.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
1970.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1961.3
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1957.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1948.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1947.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1915.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1906.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1880.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1875.1
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1857.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1848.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1829.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1823.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1789.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1788.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1783.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1762.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1740.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
1704.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1643.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1639.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
1633.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
1626.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1604.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1603.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1600.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
1590.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1572.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1561.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1558.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1556.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1556.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1555.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1552.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
1544.9
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1543.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1541.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
1535.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1527.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1522.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
1505.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
1496.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1490.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1486.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1483.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1481.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
1455.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1438.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1434.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
1434.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
1431.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
1423.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1419.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1385.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1384.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1382.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
1379.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1375.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1366.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1358.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1351.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1343.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1309.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
1308.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1298.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1283.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1282.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1273.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1271.0
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1259.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1246.5
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1246.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1232.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1213.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
1153.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1135.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1130.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
1103.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1061.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1041.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1015.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
980.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
972.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
965.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
900.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
681.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
620.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
299.0
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 299.0
Samples: 1
Max nTPM: 299.0
Min nTPM: 299.0
Sample A
299.0
Midbrain nTPM: 274.4
Samples: 1
Max nTPM: 274.4
Min nTPM: 274.4
Sample A
274.4
Superior colliculi nTPM: 209.5
Samples: 1
Max nTPM: 209.5
Min nTPM: 209.5
Sample A
209.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
458.2
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 458.2
Samples: 3
Max nTPM: 553.9
Min nTPM: 354.9
Sample A
Female
553.9
Sample B
Female
465.8
Sample C
Male
354.9
Midbrain nTPM: 332.0
Samples: 3
Max nTPM: 451.0
Min nTPM: 266.4
Sample B
Female
451.0
Sample C
Male
278.6
Sample D
Male
266.4
Periaqueductal gray nTPM: 321.4
Samples: 3
Max nTPM: 366.2
Min nTPM: 287.7
Sample B
Female
366.2
Sample C
Male
310.2
Sample D
Male
287.7
Superior colliculi nTPM: 418.8
Samples: 4
Max nTPM: 472.0
Min nTPM: 349.7
Sample A
Female
472.0
Sample B
Female
469.6
Sample C
Male
383.7
Sample D
Male
349.7
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
314.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 314.6
Samples: 4
Max nTPM: 343.8
Min nTPM: 293.3
Sample A
343.8
Sample B
317.9
Sample C
293.3
Sample D
303.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.9
Rat sample
Sample description
nTPM
Midbrain nTPM: 1.0
Samples: 4
Max nTPM: 1.7
Min nTPM: 0.5
Sample A
0.8
Sample A
0.8
Sample A
0.5
Sample A
1.7
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The Human Protein Atlas project is funded
