We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SNRPC
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SNRPC
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:84.6 nTPM
HPA Brain:42.9 nTPM
GTEx:84.6 nTPM
FANTOM5:33.7 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:51.5 nTPM
Allen mouse:11.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

42.9
Sample id Sample description nTPM
Amygdala
nTPM: 42.9
2814 Male, age 76, right hemisphere 45.3
2514 Male, age 75, right hemisphere 45.2
2695 Female, age 67, right hemisphere 43.5
1987 Female, age 91, left hemisphere 41.1
2517 Female, age 94, left hemisphere 39.3
Basal amygdala
nTPM: 40.4
2609 Male, age 75, right hemisphere 47.0
2243 Female, age 91, right hemisphere 44.7
1955 Male, age 76, both hemispheres 43.0
2110 Male, age 80, left hemisphere 36.9
2685 Female, age 94, left hemisphere 36.8
2827 Female, age 67, right hemisphere 33.9
Central amygdala
nTPM: 40.7
2826 Female, age 94, left hemisphere 46.5
1905 Male, age 76, both hemispheres 40.6
2515 Male, age 75, right hemisphere 40.4
2701 Female, age 91, right hemisphere 38.9
2239 Male, age 80, left hemisphere 37.2
Corticomedial amygdala
nTPM: 40.3
2428 Male, age 75, right hemisphere 47.0
2242 Female, age 91, right hemisphere 43.4
2829 Male, age 80, left hemisphere 39.7
2240 Male, age 76, both hemispheres 39.5
2429 Female, age 94, left hemisphere 36.4
2535 Female, age 67, right hemisphere 36.1
Lateral amygdala
nTPM: 40.0
1883 Male, age 76, both hemispheres 45.7
2516 Male, age 75, right hemisphere 44.5
2534 Female, age 94, left hemisphere 40.7
2256 Male, age 80, left hemisphere 39.5
2255 Female, age 91, right hemisphere 39.4
2830 Female, age 67, right hemisphere 30.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 84.6
Samples: 181

Max nTPM: 269.6
Min nTPM: 52.9
Std nTPM: 26.4
Median nTPM: 80.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 269.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 212.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 193.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 174.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 143.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 139.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 136.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 130.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 125.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 124.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 123.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 119.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 119.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 118.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 111.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 110.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 109.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 107.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 106.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 106.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 103.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 103.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 102.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 102.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 100.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 100.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 99.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 96.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 96.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 96.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 94.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 94.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 94.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 93.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 93.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 93.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 92.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 92.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 91.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 90.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 90.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 90.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 90.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 89.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 89.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 88.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 88.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 88.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 87.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 87.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 87.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 87.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 87.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 86.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 86.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 86.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 85.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 85.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 85.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 85.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 84.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 84.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 84.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 83.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 83.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 83.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 83.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 83.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 83.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 83.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 83.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 82.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 82.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 82.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 82.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 81.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 81.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 81.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 80.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 80.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 80.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 80.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 80.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 79.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 78.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 78.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 78.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 78.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 77.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 77.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 76.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 76.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 76.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 76.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 75.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 75.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 74.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 74.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 74.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 74.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 74.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 74.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 74.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 74.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 73.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 73.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 73.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 73.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 73.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 73.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 72.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 72.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 72.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 72.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 72.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 71.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 71.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 71.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 71.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 71.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 70.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 69.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 69.7
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 69.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 69.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 69.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 68.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 68.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 68.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 68.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 68.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 67.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 67.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 66.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 66.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 65.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 65.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 65.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 65.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 65.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 65.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 65.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 64.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 63.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 63.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 63.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 62.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 62.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 61.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 61.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 60.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 59.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 59.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 58.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 56.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 56.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 56.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 55.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 54.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 52.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

33.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 33.7
FF:10151-102I7 76 years, female 33.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.8
Pig sample Sample description nTPM
Amygdala
nTPM: 40.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 34.7
Sample A Female 51.4
Sample B Female 40.3
Sample C Male 36.8
Sample D Male 34.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

51.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 51.5
Samples: 4

Max nTPM: 56.5
Min nTPM: 46.4
Sample A Male 54.3
Sample B Male 46.4
Sample C Female 56.5
Sample D Female 48.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.4
69079981 Antisense, RP_050324_01_A08, Mouse strain C57BL/6J (56 days, male) 11.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo