MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.9 nTPM
HPA Brain:45.9 nTPM
GTEx:77.9 nTPM
FANTOM5:36.0 Scaled Tags Per Million
Pig:66.3 nTPM
Mouse:31.0 nTPM
Allen mouse:7.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2411 Female, age 72, unknown 47.8
1870 Female, age 42, unknown 47.6
2019 Male, age 18, unknown 46.8
1833 Male, age 53, unknown 45.8
1827 Male, age 72, unknown 43.4
2828 Female, age 72, unknown 41.8
2219 Male, age 76, both hemispheres 41.7
1830 Male, age 51, unknown 41.0
2586 Male, age 75, left hemisphere 36.5
2666 Male, age 74, left hemisphere 36.0
Dorsal raphe nucleus
nTPM: 45.9
2298 Female, age 72, unknown 52.4
2750 Male, age 76, both hemispheres 49.3
2047 Male, age 72, unknown 43.6
1828 Male, age 53, unknown 43.3
2016 Female, age 72, unknown 40.8
Inferior colliculus
nTPM: 39.1
1890 Male, age 53, unknown 40.3
2849 Male, age 72, unknown 40.1
1848 Female, age 42, unknown 39.4
2097 Female, age 72, unknown 36.6
Median raphe nucleus
nTPM: 44.5
2220 Male, age 76, midline 44.5
Periaquaductal grey, anterior
nTPM: 44.2
2502 Female, age 75, unknown 45.5
1947 Male, age 18, unknown 44.4
1795 Male, age 51, unknown 42.7
Periaquaductal grey, dorsal
nTPM: 38.9
2850 Male, age 76, both hemispheres 45.8
1840 Male, age 53, unknown 39.5
1831 Male, age 72, unknown 36.3
2464 Female, age 72, unknown 33.8
Periaquaductal grey, lateral
nTPM: 45.9
2272 Male, age 74, both hemispheres 54.8
2053 Male, age 18, unknown 43.9
2140 Male, age 76, both hemispheres 39.0
Pretectal area
nTPM: 44.4
2273 Male, age 74, both hemispheres 52.2
1817 Female, age 42, unknown 50.2
2224 Female, age 72, unknown 46.8
2007 Male, age 72, unknown 45.1
1816 Male, age 51, unknown 43.3
2667 Female, age 75, unknown 43.0
2407 Male, age 75, both hemispheres 42.9
1815 Male, age 53, unknown 42.5
1944 Female, age 72, unknown 41.6
2316 Male, age 76, right hemisphere 40.8
2825 Male, age 18, unknown 40.5
Red nucleus
nTPM: 45.6
1865 Male, age 51, unknown 51.7
1821 Female, age 72, unknown 51.6
2725 Female, age 75, unknown 48.8
1954 Female, age 42, unknown 48.6
1904 Male, age 53, unknown 47.8
2823 Male, age 76, right hemisphere 45.9
2769 Male, age 72, unknown 45.6
2785 Male, age 18, unknown 44.8
2227 Male, age 72, unknown 44.3
2503 Female, age 72, unknown 44.3
2584 Male, age 75, left hemisphere 38.0
2588 Male, age 74, left hemisphere 35.6
Substantia nigra
nTPM: 42.5
1916 Female, age 42, unknown 51.2
1851 Male, age 51, unknown 47.0
2699 Male, age 18, unknown 45.7
2241 Male, age 72, unknown 44.7
1941 Male, age 53, unknown 44.4
1889 Female, age 72, unknown 43.6
2583 Male, age 75, right hemisphere 39.4
2590 Female, age 75, unknown 37.8
2665 Male, age 74, both hemispheres 36.3
2409 Female, age 72, unknown 34.7
Superior colliculus
nTPM: 42.5
2587 Male, age 74, left hemisphere 49.2
1913 Female, age 42, unknown 44.3
2668 Female, age 75, unknown 43.9
1895 Male, age 76, right hemisphere 43.8
1995 Male, age 72, unknown 42.7
1796 Male, age 53, unknown 41.3
1839 Male, age 51, unknown 41.3
2261 Male, age 18, unknown 40.7
2664 Male, age 75, both hemispheres 39.3
2087 Female, age 72, unknown 38.4
Ventral tegmental area
nTPM: 43.2
1915 Female, age 42, unknown 47.1
2218 Male, age 76, both hemispheres 46.5
2223 Female, age 72, unknown 46.1
2410 Female, age 72, unknown 42.5
2021 Male, age 53, unknown 38.6
1942 Male, age 51, unknown 38.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.9
Samples: 183

Max nTPM: 136.5
Min nTPM: 47.0
Std nTPM: 14.6
Median nTPM: 75.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 136.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 135.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 123.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 119.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 113.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 113.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 111.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 110.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 107.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 106.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.0
FF:10158-103A5 76 years, female 36.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.2
Samples: 4

Max nTPM: 65.5
Min nTPM: 46.1
Sample A Female 65.3
Sample B Female 46.1
Sample C Male 52.0
Sample D Male 65.5
Midbrain
nTPM: 66.3
Samples: 4

Max nTPM: 97.8
Min nTPM: 48.3
Sample A Female 97.8
Sample B Female 64.8
Sample C Male 48.3
Sample D Male 54.3
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 51.8
Min nTPM: 49.9
Sample B Female 49.9
Sample C Male 51.8
Sample D Male 51.3
Superior colliculi
nTPM: 59.4
Samples: 4

Max nTPM: 71.6
Min nTPM: 47.0
Sample A Female 71.6
Sample B Female 47.0
Sample C Male 60.9
Sample D Male 58.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 37.3
Min nTPM: 26.8
Sample A Male 37.3
Sample B Male 28.7
Sample C Female 26.8
Sample D Female 31.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
69079981 Antisense, RP_050324_01_A08, Mouse strain C57BL/6J (56 days, male) 7.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo