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  • TPT1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2341.6 nTPM
HPA Brain:925.6 nTPM
GTEx:2341.6 nTPM
FANTOM5:674.7 Scaled Tags Per Million
Pig:1018.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

925.6
Sample id Sample description nTPM
Amygdala
nTPM: 925.6
2695 Female, age 67, right hemisphere 1226.0
2514 Male, age 75, right hemisphere 963.5
1987 Female, age 91, left hemisphere 867.6
2814 Male, age 76, right hemisphere 862.6
2517 Female, age 94, left hemisphere 708.3
Basal amygdala
nTPM: 734.7
2827 Female, age 67, right hemisphere 1030.5
2110 Male, age 80, left hemisphere 752.7
2609 Male, age 75, right hemisphere 729.9
1955 Male, age 76, both hemispheres 667.5
2685 Female, age 94, left hemisphere 658.5
2243 Female, age 91, right hemisphere 568.8
Central amygdala
nTPM: 775.8
2826 Female, age 94, left hemisphere 1213.2
2515 Male, age 75, right hemisphere 823.9
1905 Male, age 76, both hemispheres 655.8
2239 Male, age 80, left hemisphere 613.5
2701 Female, age 91, right hemisphere 572.6
Corticomedial amygdala
nTPM: 663.4
2428 Male, age 75, right hemisphere 745.8
2240 Male, age 76, both hemispheres 713.4
2535 Female, age 67, right hemisphere 704.3
2829 Male, age 80, left hemisphere 680.6
2242 Female, age 91, right hemisphere 596.5
2429 Female, age 94, left hemisphere 540.0
Lateral amygdala
nTPM: 831.8
2830 Female, age 67, right hemisphere 1318.5
2516 Male, age 75, right hemisphere 997.4
2534 Female, age 94, left hemisphere 818.4
2256 Male, age 80, left hemisphere 698.8
1883 Male, age 76, both hemispheres 682.3
2255 Female, age 91, right hemisphere 475.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2341.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 2341.6
Samples: 181

Max nTPM: 6729.7
Min nTPM: 1254.2
Std nTPM: 777.5
Median nTPM: 2182.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 6729.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5679.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5569.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5215.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4354.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4274.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4189.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 4055.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3867.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3728.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3589.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3342.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3292.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 3262.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3237.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3230.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3198.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3198.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3194.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 3119.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3112.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3022.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 3021.8
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 3012.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2999.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 2911.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2891.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 2843.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 2834.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2814.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 2774.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 2771.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2770.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 2770.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 2765.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2761.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2750.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2688.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2672.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 2647.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2640.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2628.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2601.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 2599.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2598.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 2568.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 2560.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2553.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2517.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2508.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2501.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2501.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2459.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 2449.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2449.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 2448.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 2430.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 2428.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 2427.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2425.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2420.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2406.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2399.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 2384.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2384.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2384.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2373.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 2367.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2314.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2304.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 2303.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 2302.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2301.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 2289.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 2284.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2283.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2282.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2271.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 2263.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2261.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2259.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2252.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2251.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 2237.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2224.6
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 2224.1
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2203.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 2197.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 2196.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2184.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2182.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2171.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 2164.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 2160.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2134.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2127.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 2097.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2081.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2077.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2074.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 2074.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2065.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2050.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 2048.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2043.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2038.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2037.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 2034.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2029.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2028.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 2026.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2018.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2013.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2010.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2008.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2000.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 2000.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1996.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1994.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1990.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1984.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1980.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1958.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1957.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1938.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1938.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1936.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1930.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1929.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1923.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1911.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1905.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1900.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1898.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1895.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1881.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1874.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1874.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1870.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1841.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1841.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1826.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1815.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1804.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1802.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1799.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1792.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1789.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1785.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1783.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1781.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1767.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1766.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1758.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1747.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1742.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1740.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1719.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1712.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1709.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1680.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1679.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1647.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1640.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1625.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1623.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 1600.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1590.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1577.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1558.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1557.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1553.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1549.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1459.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1443.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 1436.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1426.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1394.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1382.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1283.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1254.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

674.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 674.7
FF:10151-102I7 76 years, female 674.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1018.5
Pig sample Sample description nTPM
Amygdala
nTPM: 1018.5
Samples: 4

Max nTPM: 1227.8
Min nTPM: 662.5
Sample A Female 1227.8
Sample B Female 1225.7
Sample C Male 958.1
Sample D Male 662.5

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