MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2733.5 nTPM
HPA Brain:1095.0 nTPM
GTEx:2733.5 nTPM
FANTOM5:1131.0 Scaled Tags Per Million
Pig:1705.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1095.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 814.5
2666 Male, age 74, left hemisphere 1003.7
1870 Female, age 42, unknown 896.2
1830 Male, age 51, unknown 881.9
1833 Male, age 53, unknown 861.2
2019 Male, age 18, unknown 819.8
2828 Female, age 72, unknown 804.1
2411 Female, age 72, unknown 791.8
2219 Male, age 76, both hemispheres 732.3
1827 Male, age 72, unknown 703.3
2586 Male, age 75, left hemisphere 651.0
Dorsal raphe nucleus
nTPM: 898.4
2298 Female, age 72, unknown 992.3
2016 Female, age 72, unknown 971.4
1828 Male, age 53, unknown 874.6
2750 Male, age 76, both hemispheres 864.6
2047 Male, age 72, unknown 789.2
Inferior colliculus
nTPM: 770.9
1890 Male, age 53, unknown 865.7
2849 Male, age 72, unknown 765.6
2097 Female, age 72, unknown 747.4
1848 Female, age 42, unknown 705.0
Median raphe nucleus
nTPM: 974.9
2220 Male, age 76, midline 974.9
Periaquaductal grey, anterior
nTPM: 839.6
2502 Female, age 75, unknown 964.1
1947 Male, age 18, unknown 827.6
1795 Male, age 51, unknown 727.1
Periaquaductal grey, dorsal
nTPM: 827.6
2850 Male, age 76, both hemispheres 976.7
1831 Male, age 72, unknown 872.1
1840 Male, age 53, unknown 768.8
2464 Female, age 72, unknown 692.9
Periaquaductal grey, lateral
nTPM: 792.9
2053 Male, age 18, unknown 827.4
2140 Male, age 76, both hemispheres 782.9
2272 Male, age 74, both hemispheres 768.6
Pretectal area
nTPM: 768.2
1815 Male, age 53, unknown 876.3
2224 Female, age 72, unknown 849.4
2316 Male, age 76, right hemisphere 842.9
1817 Female, age 42, unknown 832.2
2407 Male, age 75, both hemispheres 802.4
2825 Male, age 18, unknown 786.9
2273 Male, age 74, both hemispheres 740.3
1944 Female, age 72, unknown 716.5
2007 Male, age 72, unknown 698.7
1816 Male, age 51, unknown 654.6
2667 Female, age 75, unknown 650.4
Red nucleus
nTPM: 905.8
1821 Female, age 72, unknown 1103.7
1865 Male, age 51, unknown 1058.9
2503 Female, age 72, unknown 1027.9
2584 Male, age 75, left hemisphere 968.2
1904 Male, age 53, unknown 945.9
2725 Female, age 75, unknown 919.0
2769 Male, age 72, unknown 834.1
2227 Male, age 72, unknown 830.7
1954 Female, age 42, unknown 822.9
2823 Male, age 76, right hemisphere 808.6
2785 Male, age 18, unknown 804.1
2588 Male, age 74, left hemisphere 745.7
Substantia nigra
nTPM: 1095.0
2241 Male, age 72, unknown 1445.6
2699 Male, age 18, unknown 1382.3
2409 Female, age 72, unknown 1285.5
1851 Male, age 51, unknown 1244.7
2665 Male, age 74, both hemispheres 1152.4
1916 Female, age 42, unknown 1050.4
2590 Female, age 75, unknown 946.0
1889 Female, age 72, unknown 890.4
1941 Male, age 53, unknown 889.4
2583 Male, age 75, right hemisphere 663.3
Superior colliculus
nTPM: 840.6
2587 Male, age 74, left hemisphere 1174.7
1913 Female, age 42, unknown 992.5
1995 Male, age 72, unknown 959.9
2668 Female, age 75, unknown 927.6
1839 Male, age 51, unknown 828.0
2664 Male, age 75, both hemispheres 780.9
1796 Male, age 53, unknown 722.2
2087 Female, age 72, unknown 680.7
1895 Male, age 76, right hemisphere 680.0
2261 Male, age 18, unknown 659.8
Ventral tegmental area
nTPM: 1005.5
1915 Female, age 42, unknown 1193.8
2223 Female, age 72, unknown 1066.0
2021 Male, age 53, unknown 1037.6
2218 Male, age 76, both hemispheres 932.6
2410 Female, age 72, unknown 910.5
1942 Male, age 51, unknown 892.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2733.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2733.5
Samples: 183

Max nTPM: 6964.5
Min nTPM: 944.2
Std nTPM: 902.2
Median nTPM: 2511.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 6964.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5564.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5120.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5080.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 4799.8
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 4678.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4650.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 4523.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 4512.6
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 4459.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 4442.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1131.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1131.0
FF:10158-103A5 76 years, female 1131.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1705.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1705.5
Samples: 4

Max nTPM: 2108.9
Min nTPM: 1474.8
Sample A Female 2108.9
Sample B Female 1726.3
Sample C Male 1474.8
Sample D Male 1512.0
Midbrain
nTPM: 1588.8
Samples: 4

Max nTPM: 2481.7
Min nTPM: 1074.5
Sample A Female 2481.7
Sample B Female 1680.1
Sample C Male 1119.0
Sample D Male 1074.5
Periaqueductal gray
nTPM: 1406.5
Samples: 3

Max nTPM: 1517.7
Min nTPM: 1299.1
Sample B Female 1299.1
Sample C Male 1517.7
Sample D Male 1402.6
Superior colliculi
nTPM: 1592.2
Samples: 4

Max nTPM: 1818.8
Min nTPM: 1398.5
Sample A Female 1818.8
Sample B Female 1721.3
Sample C Male 1398.5
Sample D Male 1430.2

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