On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
2733.5
nTPM
HPA Brain:
1098.5
nTPM
GTEx:
2733.5
nTPM
FANTOM5:
1131.0
Scaled Tags Per Million
Macaque:
657.2
nTPM
Pig:
1778.1
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1098.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 817.2
2666
Male, age 74, left hemisphere
1008.0
1870
Female, age 42, unknown
899.0
1830
Male, age 51, unknown
884.8
1833
Male, age 53, unknown
864.4
2019
Male, age 18, unknown
822.5
2828
Female, age 72, unknown
807.1
2411
Female, age 72, unknown
794.4
2219
Male, age 76, both hemispheres
736.4
1827
Male, age 72, unknown
705.8
2586
Male, age 75, left hemisphere
650.0
Dorsal raphe nucleus nTPM: 902.1
2298
Female, age 72, unknown
996.0
2016
Female, age 72, unknown
975.5
1828
Male, age 53, unknown
877.8
2750
Male, age 76, both hemispheres
869.4
2047
Male, age 72, unknown
791.7
Inferior colliculus nTPM: 773.7
1890
Male, age 53, unknown
868.9
2849
Male, age 72, unknown
768.4
2097
Female, age 72, unknown
750.1
1848
Female, age 42, unknown
707.5
Median raphe nucleus nTPM: 980.2
2220
Male, age 76, midline
980.2
Periaquaductal grey, anterior nTPM: 842.5
2502
Female, age 75, unknown
967.3
1947
Male, age 18, unknown
830.3
1795
Male, age 51, unknown
729.7
Periaquaductal grey, dorsal nTPM: 831.1
2850
Male, age 76, both hemispheres
982.5
1831
Male, age 72, unknown
875.3
1840
Male, age 53, unknown
771.3
2464
Female, age 72, unknown
695.2
Periaquaductal grey, lateral nTPM: 796.6
2053
Male, age 18, unknown
830.3
2140
Male, age 76, both hemispheres
787.5
2272
Male, age 74, both hemispheres
772.1
Pretectal area nTPM: 770.7
1815
Male, age 53, unknown
878.9
2224
Female, age 72, unknown
852.6
2316
Male, age 76, right hemisphere
847.6
1817
Female, age 42, unknown
835.1
2407
Male, age 75, both hemispheres
801.5
2825
Male, age 18, unknown
789.6
2273
Male, age 74, both hemispheres
743.8
1944
Female, age 72, unknown
718.9
2007
Male, age 72, unknown
701.3
1816
Male, age 51, unknown
656.4
2667
Female, age 75, unknown
652.3
Red nucleus nTPM: 908.8
1821
Female, age 72, unknown
1107.6
1865
Male, age 51, unknown
1062.6
2503
Female, age 72, unknown
1031.0
2584
Male, age 75, left hemisphere
966.7
1904
Male, age 53, unknown
949.9
2725
Female, age 75, unknown
922.3
2769
Male, age 72, unknown
837.1
2227
Male, age 72, unknown
833.3
1954
Female, age 42, unknown
825.9
2823
Male, age 76, right hemisphere
813.3
2785
Male, age 18, unknown
807.1
2588
Male, age 74, left hemisphere
748.4
Substantia nigra nTPM: 1098.5
2241
Male, age 72, unknown
1450.0
2699
Male, age 18, unknown
1387.4
2409
Female, age 72, unknown
1289.4
1851
Male, age 51, unknown
1249.0
2665
Male, age 74, both hemispheres
1157.7
1916
Female, age 42, unknown
1054.8
2590
Female, age 75, unknown
948.8
1889
Female, age 72, unknown
894.0
1941
Male, age 53, unknown
892.3
2583
Male, age 75, right hemisphere
661.9
Superior colliculus nTPM: 843.5
2587
Male, age 74, left hemisphere
1179.8
1913
Female, age 42, unknown
996.6
1995
Male, age 72, unknown
963.4
2668
Female, age 75, unknown
930.8
1839
Male, age 51, unknown
830.8
2664
Male, age 75, both hemispheres
780.0
1796
Male, age 53, unknown
724.8
1895
Male, age 76, right hemisphere
683.6
2087
Female, age 72, unknown
683.2
2261
Male, age 18, unknown
662.1
Ventral tegmental area nTPM: 1009.4
1915
Female, age 42, unknown
1198.0
2223
Female, age 72, unknown
1069.9
2021
Male, age 53, unknown
1041.2
2218
Male, age 76, both hemispheres
937.5
2410
Female, age 72, unknown
913.9
1942
Male, age 51, unknown
895.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2733.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 2733.5
Samples: 183
Max nTPM: 6964.5
Min nTPM: 944.2
Std nTPM: 902.2
Median nTPM: 2511.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6964.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
5564.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
5120.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5080.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4799.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
4678.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
4650.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
4523.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
4512.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
4459.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4442.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
4386.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
4368.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4356.9
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
4332.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
4215.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
4139.1
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
4032.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
3967.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
3888.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3863.7
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
3735.2
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
3583.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
3578.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3552.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
3545.1
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
3534.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3530.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
3494.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
3485.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
3473.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
3413.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3405.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
3391.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
3391.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
3378.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3374.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
3354.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
3350.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
3337.5
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
3320.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3317.3
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
3290.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
3237.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3234.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
3203.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
3198.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
3192.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
3182.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
3177.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
3170.0
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
3156.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
3154.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
3122.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
3120.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
3105.5
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
3089.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3049.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
3039.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
3038.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3033.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
2996.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
2974.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2964.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2959.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
2952.6
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
2902.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2888.3
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
2867.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
2846.3
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
2846.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
2844.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2840.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
2829.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2814.8
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
2776.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2751.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
2746.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
2733.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2668.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
2662.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
2645.7
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
2641.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
2627.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
2576.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2574.5
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
2568.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
2559.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2548.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
2528.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2513.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2511.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2510.9
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
2482.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
2479.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
2475.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2473.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
2473.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2452.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
2450.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
2446.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
2403.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
2400.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
2387.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2382.1
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
2379.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
2376.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
2355.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
2354.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2351.9
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
2351.4
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
2347.5
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
2343.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
2324.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
2321.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
2309.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
2304.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
2301.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2294.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
2279.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
2278.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2240.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
2231.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
2231.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2230.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
2209.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
2206.5
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
2193.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
2163.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
2151.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
2144.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2122.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
2121.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2117.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
2114.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2105.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
2076.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
2071.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
2064.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2061.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
2059.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
2054.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2050.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
2039.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
2033.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
2021.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
2009.7
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
2009.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
2008.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
1995.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
1983.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1982.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1973.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
1912.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1903.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1892.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1888.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
1878.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1827.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1825.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1824.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1818.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1803.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1794.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
1766.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1764.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1754.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1735.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1735.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
1705.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
1701.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1679.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1675.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
1655.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
1637.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
1619.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1542.1
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1527.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1468.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1396.5
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
1373.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1170.1
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
944.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
657.2
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 657.2
Samples: 1
Max nTPM: 657.2
Min nTPM: 657.2
Sample A
657.2
Midbrain nTPM: 651.0
Samples: 1
Max nTPM: 651.0
Min nTPM: 651.0
Sample A
651.0
Superior colliculi nTPM: 486.7
Samples: 1
Max nTPM: 486.7
Min nTPM: 486.7
Sample A
486.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1778.1
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1778.1
Samples: 3
Max nTPM: 2121.6
Min nTPM: 1480.6
Sample A
Female
2121.6
Sample B
Female
1732.1
Sample C
Male
1480.6
Midbrain nTPM: 1295.1
Samples: 3
Max nTPM: 1686.6
Min nTPM: 1076.4
Sample B
Female
1686.6
Sample C
Male
1122.4
Sample D
Male
1076.4
Periaqueductal gray nTPM: 1410.1
Samples: 3
Max nTPM: 1522.4
Min nTPM: 1302.7
Sample B
Female
1302.7
Sample C
Male
1522.4
Sample D
Male
1405.3
Superior colliculi nTPM: 1600.6
Samples: 4
Max nTPM: 1831.0
Min nTPM: 1405.2
Sample A
Female
1831.0
Sample B
Female
1729.3
Sample C
Male
1405.2
Sample D
Male
1437.0
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The Human Protein Atlas project is funded
