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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:244.1 nTPM
HPA Brain:291.8 nTPM
GTEx:244.1 nTPM
FANTOM5:445.7 Scaled Tags Per Million
Pig:84.9 nTPM
Mouse:255.2 nTPM
Allen mouse:20.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

291.8
Sample id Sample description nTPM
Amygdala
nTPM: 291.8
1987 Female, age 91, left hemisphere 317.6
2814 Male, age 76, right hemisphere 308.9
2514 Male, age 75, right hemisphere 301.0
2517 Female, age 94, left hemisphere 279.4
2695 Female, age 67, right hemisphere 252.0
Basal amygdala
nTPM: 255.3
2243 Female, age 91, right hemisphere 300.8
2110 Male, age 80, left hemisphere 289.6
1955 Male, age 76, both hemispheres 276.2
2685 Female, age 94, left hemisphere 263.7
2609 Male, age 75, right hemisphere 258.8
2827 Female, age 67, right hemisphere 143.0
Central amygdala
nTPM: 279.0
2239 Male, age 80, left hemisphere 323.1
2701 Female, age 91, right hemisphere 305.2
2515 Male, age 75, right hemisphere 266.8
1905 Male, age 76, both hemispheres 257.0
2826 Female, age 94, left hemisphere 243.1
Corticomedial amygdala
nTPM: 271.1
2829 Male, age 80, left hemisphere 354.7
2242 Female, age 91, right hemisphere 314.7
2240 Male, age 76, both hemispheres 283.7
2429 Female, age 94, left hemisphere 265.4
2428 Male, age 75, right hemisphere 249.9
2535 Female, age 67, right hemisphere 158.3
Lateral amygdala
nTPM: 233.4
1883 Male, age 76, both hemispheres 294.7
2255 Female, age 91, right hemisphere 252.5
2534 Female, age 94, left hemisphere 236.6
2516 Male, age 75, right hemisphere 236.4
2256 Male, age 80, left hemisphere 231.0
2830 Female, age 67, right hemisphere 149.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 244.1
Samples: 181

Max nTPM: 462.0
Min nTPM: 151.0
Std nTPM: 45.4
Median nTPM: 239.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 462.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 391.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 378.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 377.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 366.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 352.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 352.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 351.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 334.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 326.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 313.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 310.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 304.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 303.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 302.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 300.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 300.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 298.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 295.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 294.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 292.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 292.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 291.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 287.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 287.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 284.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 281.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 281.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 280.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 279.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 279.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 278.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 278.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 278.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 277.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 274.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 274.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 274.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 273.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 271.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 268.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 267.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 267.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 265.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 265.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 265.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 264.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 264.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 263.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 262.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 261.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 261.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 260.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 259.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 259.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 257.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 256.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 256.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 256.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 255.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 254.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 253.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 253.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 253.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 252.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 252.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 251.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 250.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 250.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 249.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 249.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 248.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 248.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 247.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 247.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 247.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 247.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 245.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 244.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 244.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 243.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 242.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 242.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 241.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 241.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 240.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 240.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 240.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 240.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 240.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 239.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 237.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 237.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 236.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 236.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 235.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 235.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 234.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 233.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 232.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 231.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 231.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 231.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 230.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 230.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 230.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 230.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 230.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 230.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 229.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 229.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 229.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 228.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 228.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 227.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 227.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 225.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 225.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 224.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 222.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 221.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 221.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 221.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 221.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 220.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 218.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 218.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 217.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 217.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 216.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 216.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 215.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 214.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 214.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 213.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 213.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 212.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 212.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 212.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 212.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 211.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 210.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 210.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 210.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 209.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 209.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 206.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 206.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 205.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 205.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 204.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 204.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 204.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 202.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 201.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 201.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 201.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 197.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 197.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 197.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 196.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 194.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 193.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 193.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 193.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 191.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 185.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 184.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 183.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 182.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 182.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 181.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 181.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 178.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 176.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 175.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 172.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 172.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 169.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

445.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 445.7
FF:10151-102I7 76 years, female 445.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
Pig sample Sample description nTPM
Amygdala
nTPM: 84.9
Samples: 4

Max nTPM: 107.2
Min nTPM: 76.1
Sample A Female 107.2
Sample B Female 80.0
Sample C Male 76.2
Sample D Male 76.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

255.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 255.2
Samples: 4

Max nTPM: 266.8
Min nTPM: 244.3
Sample A Male 266.8
Sample B Male 252.1
Sample C Female 244.3
Sample D Female 257.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.2
686217 Antisense, RP_040916_01_C03, Mouse strain C57BL/6J (56 days, male) 21.7
70743884 Antisense, RP_050725_01_H08, Mouse strain C57BL/6J (56 days, male) 18.8

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