HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:226.7 nTPM
HPA Brain:373.9 nTPM
GTEx:226.7 nTPM
FANTOM5:611.6 Scaled Tags Per Million
Pig:113.2 nTPM
Mouse:262.1 nTPM
Allen mouse:17.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 373.9
Sample id Sample description nTPM
Hippocampus
nTPM: 323.7
1898 Male, age 80, left hemisphere 402.6
1855 Male, age 76, left hemisphere 398.0
2621 Female, age 67, right hemisphere 362.0
1911 Female, age 85, right hemisphere 277.6
2148 Female, age 91, left hemisphere 260.3
2529 Female, age 94, left hemisphere 241.8
Dentate gyrus
nTPM: 314.5
2010 Male, age 76, both hemispheres 399.4
1927 Female, age 91, both hemispheres 359.1
2246 Female, age 85, both hemispheres 330.7
2530 Female, age 94, left hemisphere 302.0
2528 Male, age 74, both hemispheres 276.4
2531 Female, age 67, both hemispheres 219.4
Entorhinal gyrus
nTPM: 285.8
1938 Female, age 85, left hemisphere 365.5
2764 Male, age 80, right hemisphere 310.0
1787 Male, age 76, left hemisphere 309.5
2613 Female, age 94, left hemisphere 282.9
2117 Female, age 91, right hemisphere 257.7
2686 Male, age 75, right hemisphere 189.3
Hippocampus, CA1
nTPM: 365.9
2749 Male, age 80, left hemisphere 496.1
1873 Female, age 85, both hemispheres 387.7
2045 Male, age 76, both hemispheres 382.8
2527 Male, age 74, both hemispheres 290.8
2082 Female, age 91, right hemisphere 272.2
Hippocampus, CA2
nTPM: 326.1
1892 Male, age 76, both hemispheres 438.9
1963 Male, age 80, left hemisphere 369.5
2249 Male, age 74, both hemispheres 326.1
1940 Female, age 85, left hemisphere 302.8
2437 Female, age 94, left hemisphere 262.4
2113 Female, age 91, right hemisphere 257.0
Hippocampus, CA3
nTPM: 321.5
2137 Male, age 80, left hemisphere 386.2
1867 Male, age 76, both hemispheres 375.5
2436 Male, age 74, both hemispheres 348.0
1891 Female, age 85, both hemispheres 300.8
2620 Female, age 94, left hemisphere 295.7
2861 Female, age 67, both hemispheres 222.6
Parahippocampal cortex
nTPM: 302.7
1850 Male, age 80, both hemispheres 387.0
1933 Female, age 85, both hemispheres 349.9
2018 Male, age 76, both hemispheres 341.1
2250 Female, age 67, right hemisphere 332.1
2245 Female, age 91, both hemispheres 290.1
2693 Female, age 94, both hemispheres 285.8
1990 Female, age 91, right hemisphere 285.7
2532 Female, age 72, left hemisphere 277.4
2622 Female, age 67, right hemisphere 247.8
2692 Male, age 74, both hemispheres 230.2
Perirhinal gyrus
nTPM: 373.9
1847 Female, age 91, left hemisphere 450.8
1841 Female, age 85, right hemisphere 387.6
1794 Male, age 80, right hemisphere 363.3
2848 Male, age 76, right hemisphere 343.8
2521 Female, age 94, right hemisphere 324.1
Subiculum
nTPM: 283.7
1977 Female, age 85, both hemispheres 325.7
1901 Male, age 80, both hemispheres 319.7
2042 Male, age 76, both hemispheres 310.6
2619 Male, age 74, both hemispheres 273.4
2438 Female, age 94, left hemisphere 237.8
2729 Female, age 91, right hemisphere 234.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 226.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 226.7
Samples: 255

Max nTPM: 419.1
Min nTPM: 100.8
Std nTPM: 45.1
Median nTPM: 223.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 419.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 367.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 342.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 341.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 331.4
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 331.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 323.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 322.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 316.0
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 310.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 308.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 611.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 611.6
FF:10169-103B7 60 years, female 814.2
FF:10153-102I9 76 years, female 409.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 113.2
Pig sample Sample description nTPM
Subiculum
nTPM: 103.1
Samples: 4

Max nTPM: 121.2
Min nTPM: 88.4
Sample A Female 121.2
Sample B Female 103.8
Sample C Male 98.9
Sample D Male 88.4
Dorsal hippocampus
nTPM: 113.2
Samples: 4

Max nTPM: 139.3
Min nTPM: 86.0
Sample A Female 139.3
Sample B Female 117.1
Sample C Male 110.4
Sample D Male 86.0
Entorhinal cortex
nTPM: 86.6
Samples: 4

Max nTPM: 96.5
Min nTPM: 72.5
Sample A Female 85.1
Sample B Female 96.5
Sample C Male 92.1
Sample D Male 72.5
Ventral hippocampus
nTPM: 108.5
Samples: 4

Max nTPM: 130.3
Min nTPM: 81.8
Sample A Female 123.5
Sample B Female 81.8
Sample C Male 130.3
Sample D Male 98.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 262.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 245.8
Samples: 4

Max nTPM: 267.7
Min nTPM: 234.2
Sample A Male 234.2
Sample B Male 235.9
Sample C Female 245.3
Sample D Female 267.7
Hippocampal formation
nTPM: 262.1
Samples: 4

Max nTPM: 287.4
Min nTPM: 245.1
Sample A Male 262.3
Sample B Male 245.1
Sample C Female 287.4
Sample D Female 253.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 17.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.9
686217 Antisense, RP_040916_01_C03, Mouse strain C57BL/6J (56 days, male) 18.6
70743884 Antisense, RP_050725_01_H08, Mouse strain C57BL/6J (56 days, male) 17.1

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