On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
243.0
nTPM
HPA Brain:
438.9
nTPM
GTEx:
243.0
nTPM
FANTOM5:
460.1
Scaled Tags Per Million
Macaque:
113.0
nTPM
Mouse:
194.4
nTPM
Rat:
139.4
nTPM
Pig:
125.3
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
438.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 303.4
1827
Male, age 72, unknown
357.2
1870
Female, age 42, unknown
345.0
2411
Female, age 72, unknown
340.5
2666
Male, age 74, left hemisphere
316.4
1833
Male, age 53, unknown
302.5
2828
Female, age 72, unknown
301.9
1830
Male, age 51, unknown
283.6
2586
Male, age 75, left hemisphere
272.2
2219
Male, age 76, both hemispheres
267.1
2019
Male, age 18, unknown
247.6
Dorsal raphe nucleus nTPM: 390.8
2298
Female, age 72, unknown
515.6
2047
Male, age 72, unknown
435.7
2750
Male, age 76, both hemispheres
344.9
1828
Male, age 53, unknown
338.4
2016
Female, age 72, unknown
319.3
Inferior colliculus nTPM: 303.5
2097
Female, age 72, unknown
331.6
2849
Male, age 72, unknown
323.8
1848
Female, age 42, unknown
299.7
1890
Male, age 53, unknown
258.9
Median raphe nucleus nTPM: 438.9
2220
Male, age 76, midline
438.9
Periaquaductal grey, anterior nTPM: 360.2
1947
Male, age 18, unknown
426.0
1795
Male, age 51, unknown
350.1
2502
Female, age 75, unknown
304.4
Periaquaductal grey, dorsal nTPM: 342.3
2850
Male, age 76, both hemispheres
423.2
1840
Male, age 53, unknown
377.9
2464
Female, age 72, unknown
297.0
1831
Male, age 72, unknown
271.1
Periaquaductal grey, lateral nTPM: 342.8
2272
Male, age 74, both hemispheres
370.0
2053
Male, age 18, unknown
329.1
2140
Male, age 76, both hemispheres
329.1
Pretectal area nTPM: 337.4
2224
Female, age 72, unknown
407.0
2273
Male, age 74, both hemispheres
371.9
2825
Male, age 18, unknown
367.5
1816
Male, age 51, unknown
353.2
2667
Female, age 75, unknown
351.3
1815
Male, age 53, unknown
339.9
1817
Female, age 42, unknown
336.3
1944
Female, age 72, unknown
333.2
2007
Male, age 72, unknown
330.7
2407
Male, age 75, both hemispheres
289.1
2316
Male, age 76, right hemisphere
231.8
Red nucleus nTPM: 255.1
2725
Female, age 75, unknown
321.7
1821
Female, age 72, unknown
300.3
2584
Male, age 75, left hemisphere
269.9
1954
Female, age 42, unknown
256.4
1865
Male, age 51, unknown
255.5
2503
Female, age 72, unknown
252.3
1904
Male, age 53, unknown
248.3
2227
Male, age 72, unknown
239.0
2769
Male, age 72, unknown
237.7
2823
Male, age 76, right hemisphere
234.2
2588
Male, age 74, left hemisphere
223.9
2785
Male, age 18, unknown
222.2
Substantia nigra nTPM: 341.1
1916
Female, age 42, unknown
403.9
2241
Male, age 72, unknown
394.9
1851
Male, age 51, unknown
366.6
1941
Male, age 53, unknown
352.0
2409
Female, age 72, unknown
346.1
1889
Female, age 72, unknown
345.0
2699
Male, age 18, unknown
327.5
2590
Female, age 75, unknown
298.4
2665
Male, age 74, both hemispheres
296.8
2583
Male, age 75, right hemisphere
280.2
Superior colliculus nTPM: 290.5
2587
Male, age 74, left hemisphere
338.9
2261
Male, age 18, unknown
328.7
1796
Male, age 53, unknown
324.4
1839
Male, age 51, unknown
301.6
2087
Female, age 72, unknown
295.6
2668
Female, age 75, unknown
288.4
1913
Female, age 42, unknown
266.3
1895
Male, age 76, right hemisphere
263.5
2664
Male, age 75, both hemispheres
252.8
1995
Male, age 72, unknown
244.8
Ventral tegmental area nTPM: 339.8
2410
Female, age 72, unknown
363.6
1915
Female, age 42, unknown
356.8
2218
Male, age 76, both hemispheres
345.3
2021
Male, age 53, unknown
343.4
2223
Female, age 72, unknown
324.0
1942
Male, age 51, unknown
305.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
243.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 243.0
Samples: 183
Max nTPM: 371.2
Min nTPM: 125.9
Std nTPM: 49.0
Median nTPM: 239.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
371.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
366.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
362.9
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
355.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
350.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
349.8
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
348.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
343.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
338.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
337.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
322.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
320.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
320.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
318.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
315.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
313.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
312.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
311.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
309.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
307.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
304.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
302.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
302.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
301.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
299.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
297.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
297.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
294.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
293.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
292.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
290.6
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
290.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
289.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
287.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
285.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
285.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
284.1
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
283.7
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
282.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
280.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
280.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
280.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
280.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
277.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
277.2
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
277.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
276.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
276.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
275.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
274.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
273.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
273.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
271.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
266.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
265.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
264.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
263.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
263.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
262.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
261.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
261.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
260.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
259.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
258.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
258.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
258.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
257.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
257.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
256.6
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
255.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
255.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
254.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
253.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
252.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
250.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
250.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
249.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
249.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
249.0
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
249.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
248.4
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
248.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
247.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
246.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
246.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
245.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
245.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
243.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
240.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
239.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
239.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
239.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
238.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
237.3
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
235.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
235.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
234.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
234.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
233.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
232.3
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
231.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
230.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
230.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
229.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
229.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
229.0
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
228.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
227.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
226.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
226.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
225.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
223.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
222.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
221.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
221.4
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
220.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
220.2
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
219.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
218.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
218.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
217.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
216.1
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
215.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
215.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
213.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
212.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
212.0
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
211.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
211.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
211.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
211.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
210.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
209.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
208.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
208.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
208.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
208.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
208.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
207.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
207.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
206.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
205.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
205.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
204.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
204.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
203.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
203.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
202.3
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
199.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
198.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
198.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
197.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
196.7
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
194.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
194.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
192.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
191.5
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
191.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
190.7
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
190.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
188.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
188.0
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
187.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
184.0
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
183.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
181.9
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
180.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
175.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
174.1
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
172.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
172.2
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
172.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
166.8
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
166.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
165.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
165.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
163.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
163.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
159.2
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
156.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
152.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
150.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
125.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
113.0
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 113.0
Samples: 1
Max nTPM: 113.0
Min nTPM: 113.0
Sample A
113.0
Midbrain nTPM: 106.3
Samples: 1
Max nTPM: 106.3
Min nTPM: 106.3
Sample A
106.3
Superior colliculi nTPM: 111.3
Samples: 1
Max nTPM: 111.3
Min nTPM: 111.3
Sample A
111.3
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.3
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 125.3
Samples: 3
Max nTPM: 135.4
Min nTPM: 105.2
Sample A
Female
135.4
Sample B
Female
105.2
Sample C
Male
135.3
Midbrain nTPM: 110.4
Samples: 3
Max nTPM: 116.1
Min nTPM: 103.2
Sample B
Female
112.0
Sample C
Male
116.1
Sample D
Male
103.2
Periaqueductal gray nTPM: 114.1
Samples: 3
Max nTPM: 133.4
Min nTPM: 100.6
Sample B
Female
108.3
Sample C
Male
133.4
Sample D
Male
100.6
Superior colliculi nTPM: 110.2
Samples: 4
Max nTPM: 119.3
Min nTPM: 92.4
Sample A
Female
119.3
Sample B
Female
115.0
Sample C
Male
114.1
Sample D
Male
92.4
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
194.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 194.4
Samples: 4
Max nTPM: 208.3
Min nTPM: 184.4
Sample A
195.1
Sample B
208.3
Sample C
184.4
Sample D
189.9
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
139.4
Rat sample
Sample description
nTPM
Midbrain nTPM: 139.4
Samples: 4
Max nTPM: 151.5
Min nTPM: 127.4
Sample A
141.7
Sample A
151.5
Sample A
137.1
Sample A
127.4
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The Human Protein Atlas project is funded
