MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:243.0 nTPM
HPA Brain:437.5 nTPM
GTEx:243.0 nTPM
FANTOM5:460.1 Scaled Tags Per Million
Pig:119.5 nTPM
Mouse:236.4 nTPM
Allen mouse:12.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 437.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 302.3
1827 Male, age 72, unknown 355.9
1870 Female, age 42, unknown 343.9
2411 Female, age 72, unknown 339.4
2666 Male, age 74, left hemisphere 315.3
1833 Male, age 53, unknown 301.4
2828 Female, age 72, unknown 300.8
1830 Male, age 51, unknown 282.6
2586 Male, age 75, left hemisphere 271.0
2219 Male, age 76, both hemispheres 266.2
2019 Male, age 18, unknown 246.8
Dorsal raphe nucleus
nTPM: 389.4
2298 Female, age 72, unknown 513.7
2047 Male, age 72, unknown 434.2
2750 Male, age 76, both hemispheres 343.8
1828 Male, age 53, unknown 337.1
2016 Female, age 72, unknown 318.0
Inferior colliculus
nTPM: 302.4
2097 Female, age 72, unknown 330.4
2849 Male, age 72, unknown 322.5
1848 Female, age 42, unknown 298.6
1890 Male, age 53, unknown 257.9
Median raphe nucleus
nTPM: 437.5
2220 Male, age 76, midline 437.5
Periaquaductal grey, anterior
nTPM: 358.8
1947 Male, age 18, unknown 424.5
1795 Male, age 51, unknown 348.7
2502 Female, age 75, unknown 303.2
Periaquaductal grey, dorsal
nTPM: 341.1
2850 Male, age 76, both hemispheres 421.6
1840 Male, age 53, unknown 376.6
2464 Female, age 72, unknown 296.0
1831 Male, age 72, unknown 270.0
Periaquaductal grey, lateral
nTPM: 341.5
2272 Male, age 74, both hemispheres 368.7
2053 Male, age 18, unknown 327.9
2140 Male, age 76, both hemispheres 327.9
Pretectal area
nTPM: 336.2
2224 Female, age 72, unknown 405.5
2273 Male, age 74, both hemispheres 370.5
2825 Male, age 18, unknown 366.2
1816 Male, age 51, unknown 352.1
2667 Female, age 75, unknown 350.1
1815 Male, age 53, unknown 338.9
1817 Female, age 42, unknown 335.1
1944 Female, age 72, unknown 332.1
2007 Male, age 72, unknown 329.4
2407 Male, age 75, both hemispheres 287.6
2316 Male, age 76, right hemisphere 231.0
Red nucleus
nTPM: 254.2
2725 Female, age 75, unknown 320.4
1821 Female, age 72, unknown 299.3
2584 Male, age 75, left hemisphere 268.6
1954 Female, age 42, unknown 255.4
1865 Male, age 51, unknown 254.6
2503 Female, age 72, unknown 251.5
1904 Male, age 53, unknown 247.3
2227 Male, age 72, unknown 238.2
2769 Male, age 72, unknown 236.8
2823 Male, age 76, right hemisphere 233.3
2588 Male, age 74, left hemisphere 223.3
2785 Male, age 18, unknown 221.3
Substantia nigra
nTPM: 339.9
1916 Female, age 42, unknown 402.1
2241 Male, age 72, unknown 393.6
1851 Male, age 51, unknown 365.2
1941 Male, age 53, unknown 350.8
2409 Female, age 72, unknown 345.1
1889 Female, age 72, unknown 343.7
2699 Male, age 18, unknown 326.2
2590 Female, age 75, unknown 297.4
2665 Male, age 74, both hemispheres 295.7
2583 Male, age 75, right hemisphere 279.0
Superior colliculus
nTPM: 289.4
2587 Male, age 74, left hemisphere 337.7
2261 Male, age 18, unknown 327.5
1796 Male, age 53, unknown 323.2
1839 Male, age 51, unknown 300.4
2087 Female, age 72, unknown 294.5
2668 Female, age 75, unknown 287.3
1913 Female, age 42, unknown 265.2
1895 Male, age 76, right hemisphere 262.6
2664 Male, age 75, both hemispheres 251.5
1995 Male, age 72, unknown 243.8
Ventral tegmental area
nTPM: 338.5
2410 Female, age 72, unknown 362.2
1915 Female, age 42, unknown 355.5
2218 Male, age 76, both hemispheres 344.2
2021 Male, age 53, unknown 342.2
2223 Female, age 72, unknown 322.8
1942 Male, age 51, unknown 304.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 243.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 243.0
Samples: 183

Max nTPM: 371.2
Min nTPM: 125.9
Std nTPM: 49.0
Median nTPM: 239.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 371.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 366.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 362.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 355.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 350.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 349.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 348.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 343.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 338.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 337.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 322.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 460.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 460.1
FF:10158-103A5 76 years, female 460.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 119.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 117.6
Samples: 4

Max nTPM: 134.7
Min nTPM: 96.3
Sample A Female 134.6
Sample B Female 104.9
Sample C Male 134.7
Sample D Male 96.3
Midbrain
nTPM: 119.5
Samples: 4

Max nTPM: 147.6
Min nTPM: 103.0
Sample A Female 147.6
Sample B Female 111.5
Sample C Male 115.7
Sample D Male 103.0
Periaqueductal gray
nTPM: 113.8
Samples: 3

Max nTPM: 133.1
Min nTPM: 100.4
Sample B Female 107.9
Sample C Male 133.1
Sample D Male 100.4
Superior colliculi
nTPM: 109.7
Samples: 4

Max nTPM: 118.5
Min nTPM: 92.0
Sample A Female 118.5
Sample B Female 114.5
Sample C Male 113.6
Sample D Male 92.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 236.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 236.4
Samples: 4

Max nTPM: 250.9
Min nTPM: 225.9
Sample A Male 242.3
Sample B Male 226.4
Sample C Female 225.9
Sample D Female 250.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
686217 Antisense, RP_040916_01_C03, Mouse strain C57BL/6J (56 days, male) 13.2
70743884 Antisense, RP_050725_01_H08, Mouse strain C57BL/6J (56 days, male) 12.6

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